Analysis of interatomic Contacts of Structural Units in PDB entry:
2GH1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GH1 entry

There are 2 chains in PDB entry 2GH1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 13CYS 293
B
 TYR 13CYS 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2GH1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 22Right-handed alpha
Helix 2
2
A
23 33Right-handed alpha
Helix 3
3
A
51 58Right-handed alpha
Helix 4
4
A
73 86Right-handed alpha
Helix 5
5
A
115 119Right-handed 310
Helix 6
6
A
121 132Right-handed alpha
Helix 7
7
A
145 151Right-handed alpha
Helix 8
8
A
159 164Right-handed alpha
Helix 9
9
A
165 179Right-handed alpha
Helix 10
10
A
185 188Right-handed 310
Helix 11
11
A
189 197Right-handed alpha
Helix 12
12
A
219 232Right-handed alpha
Helix 13
13
A
240 250Right-handed alpha
Helix 14
14
A
254 272Right-handed alpha
Helix 15
15
B
16 22Right-handed alpha
Helix 16
16
B
23 33Right-handed alpha
Helix 17
17
B
51 58Right-handed alpha
Helix 18
18
B
73 86Right-handed alpha
Helix 19
19
B
115 119Right-handed 310
Helix 20
20
B
121 132Right-handed alpha
Helix 21
21
B
145 151Right-handed alpha
Helix 22
22
B
159 164Right-handed alpha
Helix 23
23
B
165 179Right-handed alpha
Helix 24
24
B
185 188Right-handed 310
Helix 25
25
B
189 197Right-handed alpha
Helix 26
26
B
219 232Right-handed alpha
Helix 27
27
B
240 250Right-handed alpha
Helix 28
28
B
254 272Right-handed alpha
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There are 4 sheets in PDB entry 2GH1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 95first strand
Strand 2
A
66 71parallel
Strand 3
A
42 46parallel
Strand 4
A
107 113parallel
Strand 5
A
133 143parallel
Strand 6
A
285 290anti-parallel
Strand 7
A
200 206anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
278 280anti-parallel
Strand 3
A
211 213anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 95first strand
Strand 2
B
66 71parallel
Strand 3
B
42 46parallel
Strand 4
B
107 113parallel
Strand 5
B
133 143parallel
Strand 6
B
285 290anti-parallel
Strand 7
B
200 206anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
278 280anti-parallel
Strand 3
B
211 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il