Analysis of interatomic Contacts of Structural Units in PDB entry:
2GIF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2GIF entry

There are 3 chains in PDB entry 2GIF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PHE 1033
B	PRO 2	THR 1045
C	PRO 2	PHE 1033

There are119 helices in PDB entry 2GIF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	30	Right-handed alpha
Helix 2	2	A	53	61	Right-handed alpha
Helix 3	3	A	61	67	Right-handed alpha
Helix 4	4	A	99	115	Right-handed alpha
Helix 5	5	A	116	118	Right-handed 310
Helix 6	6	A	119	124	Right-handed alpha
Helix 7	7	A	150	162	Right-handed alpha
Helix 8	8	A	162	169	Right-handed alpha
Helix 9	9	A	189	196	Right-handed alpha
Helix 10	10	A	199	211	Right-handed alpha
Helix 11	11	A	242	248	Right-handed alpha
Helix 12	12	A	262	265	Right-handed alpha
Helix 13	13	A	298	314	Right-handed alpha
Helix 14	14	A	315	317	Right-handed 310
Helix 15	15	A	329	360	Right-handed alpha
Helix 16	16	A	365	386	Right-handed alpha
Helix 17	17	A	392	423	Right-handed alpha
Helix 18	18	A	426	454	Right-handed alpha
Helix 19	19	A	455	457	Right-handed 310
Helix 20	20	A	460	485	Right-handed alpha
Helix 21	21	A	487	496	Right-handed alpha
Helix 22	22	A	515	537	Right-handed alpha
Helix 23	23	A	538	559	Right-handed alpha
Helix 24	24	A	583	602	Right-handed alpha
Helix 25	25	A	643	658	Right-handed alpha
Helix 26	26	A	691	708	Right-handed alpha
Helix 27	27	A	732	739	Right-handed alpha
Helix 28	28	A	742	755	Right-handed alpha
Helix 29	29	A	777	780	Right-handed 310
Helix 30	30	A	782	788	Right-handed 310
Helix 31	31	A	836	850	Right-handed alpha
Helix 32	32	A	861	869	Right-handed alpha
Helix 33	33	A	872	893	Right-handed alpha
Helix 34	34	A	896	903	Right-handed alpha
Helix 35	35	A	904	919	Right-handed alpha
Helix 36	36	A	924	955	Right-handed alpha
Helix 37	37	A	959	971	Right-handed alpha
Helix 38	38	A	972	992	Right-handed alpha
Helix 39	39	A	996	1031	Right-handed alpha
Helix 40	40	B	2	7	Right-handed alpha
Helix 41	41	B	8	29	Right-handed alpha
Helix 42	42	B	53	61	Right-handed alpha
Helix 43	43	B	61	67	Right-handed alpha
Helix 44	44	B	99	109	Right-handed alpha
Helix 45	45	B	110	115	Right-handed alpha
Helix 46	46	B	116	118	Right-handed 310
Helix 47	47	B	119	126	Right-handed alpha
Helix 48	48	B	150	162	Right-handed alpha
Helix 49	49	B	162	169	Right-handed alpha
Helix 50	50	B	189	196	Right-handed alpha
Helix 51	51	B	199	211	Right-handed alpha
Helix 52	52	B	242	249	Right-handed alpha
Helix 53	53	B	262	265	Right-handed alpha
Helix 54	54	B	298	313	Right-handed alpha
Helix 55	55	B	314	317	Right-handed 310
Helix 56	56	B	329	360	Right-handed alpha
Helix 57	57	B	361	386	Right-handed alpha
Helix 58	58	B	391	400	Right-handed alpha
Helix 59	59	B	401	424	Right-handed alpha
Helix 60	60	B	426	458	Right-handed alpha
Helix 61	61	B	460	496	Right-handed alpha
Helix 62	62	B	515	534	Right-handed alpha
Helix 63	63	B	540	559	Right-handed alpha
Helix 64	64	B	583	601	Right-handed alpha
Helix 65	65	B	633	637	Right-handed 310
Helix 66	66	B	639	642	Right-handed 310
Helix 67	67	B	643	657	Right-handed alpha
Helix 68	68	B	691	708	Right-handed alpha
Helix 69	69	B	732	740	Right-handed alpha
Helix 70	70	B	742	755	Right-handed alpha
Helix 71	71	B	777	780	Right-handed 310
Helix 72	72	B	782	788	Right-handed 310
Helix 73	73	B	836	849	Right-handed alpha
Helix 74	74	B	860	868	Right-handed alpha
Helix 75	75	B	872	892	Right-handed alpha
Helix 76	76	B	898	903	Right-handed alpha
Helix 77	77	B	904	919	Right-handed alpha
Helix 78	78	B	924	956	Right-handed alpha
Helix 79	79	B	959	991	Right-handed alpha
Helix 80	80	B	996	1031	Right-handed alpha
Helix 81	81	C	8	29	Right-handed alpha
Helix 82	82	C	53	59	Right-handed alpha
Helix 83	83	C	61	69	Right-handed alpha
Helix 84	84	C	99	115	Right-handed alpha
Helix 85	85	C	119	126	Right-handed alpha
Helix 86	86	C	150	162	Right-handed alpha
Helix 87	87	C	162	167	Right-handed alpha
Helix 88	88	C	189	196	Right-handed alpha
Helix 89	89	C	199	211	Right-handed alpha
Helix 90	90	C	242	248	Right-handed alpha
Helix 91	91	C	262	265	Right-handed alpha
Helix 92	92	C	298	314	Right-handed alpha
Helix 93	93	C	315	317	Right-handed 310
Helix 94	94	C	329	360	Right-handed alpha
Helix 95	95	C	361	386	Right-handed alpha
Helix 96	96	C	392	406	Right-handed alpha
Helix 97	97	C	406	423	Right-handed alpha
Helix 98	98	C	426	452	Right-handed alpha
Helix 99	99	C	454	459	Right-handed 310
Helix 100	100	C	460	496	Right-handed alpha
Helix 101	101	C	514	536	Right-handed alpha
Helix 102	102	C	539	559	Right-handed alpha
Helix 103	103	C	583	602	Right-handed alpha
Helix 104	104	C	633	637	Right-handed 310
Helix 105	105	C	643	655	Right-handed alpha
Helix 106	106	C	690	707	Right-handed alpha
Helix 107	107	C	732	740	Right-handed alpha
Helix 108	108	C	742	755	Right-handed alpha
Helix 109	109	C	777	780	Right-handed 310
Helix 110	110	C	782	788	Right-handed 310
Helix 111	111	C	836	848	Right-handed alpha
Helix 112	112	C	860	892	Right-handed alpha
Helix 113	113	C	896	903	Right-handed alpha
Helix 114	114	C	904	919	Right-handed alpha
Helix 115	115	C	924	955	Right-handed alpha
Helix 116	116	C	959	971	Right-handed alpha
Helix 117	117	C	971	991	Right-handed alpha
Helix 118	118	C	996	1017	Right-handed alpha
Helix 119	119	C	1017	1031	Right-handed alpha

There are 26 sheets in PDB entry 2GIF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	390	391	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	822	831	anti-parallel
Strand 7	A	713	718	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	822	831	anti-parallel
Strand 7	A	679	686	anti-parallel
Strand 8	A	855	859	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	138	142	anti-parallel
Strand 4	A	323	328	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	278	281	anti-parallel
Strand 4	A	606	615	anti-parallel
Strand 5	A	620	631	anti-parallel
Strand 6	A	571	577	anti-parallel
Strand 7	A	663	666	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	767	775	parallel
Strand 4	A	757	764	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	219	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	B	724	731	parallel
Strand 4	B	805	812	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	812	first strand
Strand 2	A	724	731	anti-parallel
Strand 3	C	232	235	parallel
Strand 4	C	215	219	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	792	first strand
Strand 2	A	798	800	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	815	819	anti-parallel
Strand 6	B	822	831	anti-parallel
Strand 7	B	713	718	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	815	819	anti-parallel
Strand 6	B	822	831	anti-parallel
Strand 7	B	679	686	anti-parallel
Strand 8	B	855	859	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	178	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	138	144	anti-parallel
Strand 4	B	321	328	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	178	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	278	281	anti-parallel
Strand 4	B	606	615	anti-parallel
Strand 5	B	620	631	anti-parallel
Strand 6	B	571	577	anti-parallel
Strand 7	B	662	663	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	768	775	parallel
Strand 4	B	757	763	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	C	726	731	parallel
Strand 4	C	805	810	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	259	261	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	792	first strand
Strand 2	B	798	800	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	390	391	parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	815	819	anti-parallel
Strand 6	C	822	831	anti-parallel
Strand 7	C	713	718	anti-parallel

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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	815	819	anti-parallel
Strand 6	C	822	831	anti-parallel
Strand 7	C	680	686	anti-parallel
Strand 8	C	855	859	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	178	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	321	328	anti-parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	178	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	606	613	anti-parallel
Strand 5	C	624	631	anti-parallel
Strand 6	C	571	577	anti-parallel
Strand 7	C	662	666	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	767	775	parallel
Strand 4	C	757	764	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	259	261	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	790	792	first strand
Strand 2	C	798	800	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2GIF

Analysis of interatomic Contacts of Structural Units in PDB entry:
2GIF