Analysis of interatomic Contacts of Structural Units in PDB entry:
2GJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GJD entry

There are 4 chains in PDB entry 2GJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 3LYS 157
B
SER 2LYS 157
C
SER 3LYS 157
D
SER 3LYS 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2GJD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
3 19Right-handed alpha
Helix 2
2
A
94 98Right-handed 310
Helix 3
3
A
108 121Right-handed alpha
Helix 4
4
A
130 140Right-handed alpha
Helix 5
5
A
140 155Right-handed alpha
Helix 6
6
B
3 19Right-handed alpha
Helix 7
7
B
94 98Right-handed 310
Helix 8
8
B
108 122Right-handed alpha
Helix 9
9
B
130 140Right-handed alpha
Helix 10
10
B
140 155Right-handed alpha
Helix 11
11
C
3 20Right-handed alpha
Helix 12
12
C
94 98Right-handed 310
Helix 13
13
C
108 120Right-handed alpha
Helix 14
14
C
130 140Right-handed alpha
Helix 15
15
C
140 155Right-handed alpha
Helix 16
16
D
3 19Right-handed alpha
Helix 17
17
D
94 98Right-handed 310
Helix 18
18
D
108 121Right-handed alpha
Helix 19
19
D
130 140Right-handed alpha
Helix 20
20
D
140 155Right-handed alpha
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There are 4 sheets in PDB entry 2GJD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
25 30first strand
Strand 2
A
36 46anti-parallel
Strand 3
A
57 63anti-parallel
Strand 4
A
74 76anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
25 30first strand
Strand 2
B
36 46anti-parallel
Strand 3
B
57 63anti-parallel
Strand 4
B
74 76anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
25 30first strand
Strand 2
C
36 46anti-parallel
Strand 3
C
57 63anti-parallel
Strand 4
C
74 76anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
25 30first strand
Strand 2
D
36 46anti-parallel
Strand 3
D
57 63anti-parallel
Strand 4
D
74 76anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il