Analysis of interatomic Contacts of Structural Units in PDB entry:
2GMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GMI entry

There are 3 chains in PDB entry 2GMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 152
B
 LYS 3PHE 137
C
 MET 501GLY 576
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2GMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
88 92Right-handed 310
Helix 3
3
A
100 114Right-handed alpha
Helix 4
4
A
122 132Right-handed alpha
Helix 5
5
A
132 148Right-handed alpha
Helix 6
6
B
5 19Right-handed alpha
Helix 7
7
B
108 119Right-handed alpha
Helix 8
8
C
522 535Right-handed alpha
Helix 9
9
C
537 541Right-handed 310
Helix 10
10
C
556 560Right-handed 310
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There are 4 sheets in PDB entry 2GMI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 28first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
50 57anti-parallel
Strand 4
A
68 71anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 28first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
50 57anti-parallel
Strand 4
A
149 150anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
40 46anti-parallel
Strand 3
B
57 63anti-parallel
Strand 4
B
74 77anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
512 516first strand
Strand 2
C
502 507anti-parallel
Strand 3
C
566 570parallel
Strand 4
C
542 545anti-parallel
Strand 5
C
548 549anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il