Analysis of interatomic Contacts of Structural Units in PDB entry:
2GPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GPV entry

There are 9 chains in PDB entry 2GPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 232GLU 455
B
PRO 233GLU 455
C
PRO 233GLU 455
D
PRO 233GLU 441
E
TYR 234GLU 441
F
PRO 233LEU 440
G
GLY 1319GLY 1330
H
GLY 1319GLY 1330
I
GLY 1319GLY 1330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 2GPV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
235 244Right-handed alpha
Helix 2
2
A
260 285Right-handed alpha
Helix 3
3
A
288 292Right-handed 310
Helix 4
4
A
293 317Right-handed alpha
Helix 5
5
A
333 341Right-handed alpha
Helix 6
6
A
342 360Right-handed alpha
Helix 7
7
A
362 376Right-handed alpha
Helix 8
8
A
384 407Right-handed alpha
Helix 9
9
A
412 419Right-handed alpha
Helix 10
10
A
420 440Right-handed alpha
Helix 11
11
A
443 455Right-handed alpha
Helix 12
12
B
235 245Right-handed alpha
Helix 13
13
B
260 286Right-handed alpha
Helix 14
14
B
288 292Right-handed 310
Helix 15
15
B
293 317Right-handed alpha
Helix 16
16
B
333 341Right-handed alpha
Helix 17
17
B
342 359Right-handed alpha
Helix 18
18
B
362 376Right-handed alpha
Helix 19
19
B
384 407Right-handed alpha
Helix 20
20
B
412 419Right-handed alpha
Helix 21
21
B
420 441Right-handed alpha
Helix 22
22
B
443 455Right-handed alpha
Helix 23
23
C
235 244Right-handed alpha
Helix 24
24
C
260 284Right-handed alpha
Helix 25
25
C
293 318Right-handed alpha
Helix 26
26
C
333 341Right-handed alpha
Helix 27
27
C
342 360Right-handed alpha
Helix 28
28
C
362 376Right-handed alpha
Helix 29
29
C
384 407Right-handed alpha
Helix 30
30
C
412 419Right-handed alpha
Helix 31
31
C
420 440Right-handed alpha
Helix 32
32
C
442 454Right-handed alpha
Helix 33
33
D
235 245Right-handed alpha
Helix 34
34
D
260 285Right-handed alpha
Helix 35
35
D
288 292Right-handed 310
Helix 36
36
D
293 317Right-handed alpha
Helix 37
37
D
334 340Right-handed alpha
Helix 38
38
D
342 360Right-handed alpha
Helix 39
39
D
362 376Right-handed alpha
Helix 40
40
D
384 407Right-handed alpha
Helix 41
41
D
412 419Right-handed alpha
Helix 42
42
D
420 439Right-handed alpha
Helix 43
43
E
235 245Right-handed alpha
Helix 44
44
E
260 285Right-handed alpha
Helix 45
45
E
288 292Right-handed 310
Helix 46
46
E
293 317Right-handed alpha
Helix 47
47
E
334 340Right-handed alpha
Helix 48
48
E
342 360Right-handed alpha
Helix 49
49
E
362 376Right-handed alpha
Helix 50
50
E
384 407Right-handed alpha
Helix 51
51
E
412 419Right-handed alpha
Helix 52
52
E
420 441Right-handed alpha
Helix 53
53
F
235 244Right-handed alpha
Helix 54
54
F
260 284Right-handed alpha
Helix 55
55
F
288 292Right-handed 310
Helix 56
56
F
293 318Right-handed alpha
Helix 57
57
F
334 340Right-handed alpha
Helix 58
58
F
342 359Right-handed alpha
Helix 59
59
F
362 376Right-handed alpha
Helix 60
60
F
384 407Right-handed alpha
Helix 61
61
F
412 419Right-handed alpha
Helix 62
62
F
420 439Right-handed alpha
Helix 63
63
G
1320 1330Right-handed alpha
Helix 64
64
H
1319 1330Right-handed alpha
Helix 65
65
I
1319 1330Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2GPV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
324 327first strand
Strand 2
A
330 332anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
324 327first strand
Strand 2
B
330 332anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
324 327first strand
Strand 2
C
330 332anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
323 327first strand
Strand 2
D
330 333anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
323 327first strand
Strand 2
E
330 333anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
323 327first strand
Strand 2
F
330 333anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il