Analysis of interatomic Contacts of Structural Units in PDB entry:
2GQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GQ8 entry

There is 1 chain in PDB entry 2GQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2GQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
38 48Right-handed alpha
Helix 3
3
A
62 66Right-handed 310
Helix 4
4
A
76 94Right-handed alpha
Helix 5
5
A
109 113Right-handed 310
Helix 6
6
A
152 173Right-handed alpha
Helix 7
7
A
186 193Right-handed alpha
Helix 8
8
A
194 197Right-handed 310
Helix 9
9
A
206 211Right-handed alpha
Helix 10
10
A
211 226Right-handed alpha
Helix 11
11
A
247 263Right-handed alpha
Helix 12
12
A
281 292Right-handed alpha
Helix 13
13
A
303 313Right-handed alpha
Helix 14
14
A
322 328Right-handed alpha
Helix 15
15
A
330 338Right-handed alpha
Helix 16
16
A
345 349Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 2GQ8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 16anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
53 60parallel
Strand 3
A
96 102parallel
Strand 4
A
177 181parallel
Strand 5
A
230 234parallel
Strand 6
A
266 270parallel
Strand 7
A
295 299parallel
Strand 8
A
318 320parallel
Strand 9
A
20 22parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
149 150parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
141 144anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il