Analysis of interatomic Contacts of Structural Units in PDB entry:
2GQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GQN entry

There are 2 chains in PDB entry 2GQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5VAL 395
B
 LYS 4VAL 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2GQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 13Right-handed alpha
Helix 2
2
A
16 21Right-handed alpha
Helix 3
3
A
38 48Right-handed alpha
Helix 4
4
A
61 76Right-handed alpha
Helix 5
5
A
85 96Right-handed alpha
Helix 6
6
A
111 121Right-handed alpha
Helix 7
7
A
122 126Right-handed 310
Helix 8
8
A
136 144Right-handed 310
Helix 9
9
A
165 177Right-handed alpha
Helix 10
10
A
195 200Right-handed 310
Helix 11
11
A
226 240Right-handed alpha
Helix 12
12
A
245 257Right-handed alpha
Helix 13
13
A
258 279Right-handed alpha
Helix 14
14
A
296 304Right-handed alpha
Helix 15
15
A
320 329Right-handed alpha
Helix 16
16
A
351 357Right-handed alpha
Helix 17
17
A
379 393Right-handed alpha
Helix 18
18
B
5 13Right-handed alpha
Helix 19
19
B
16 21Right-handed alpha
Helix 20
20
B
38 48Right-handed alpha
Helix 21
21
B
56 60Right-handed 310
Helix 22
22
B
61 76Right-handed alpha
Helix 23
23
B
85 98Right-handed alpha
Helix 24
24
B
111 121Right-handed alpha
Helix 25
25
B
122 126Right-handed 310
Helix 26
26
B
136 144Right-handed 310
Helix 27
27
B
165 177Right-handed alpha
Helix 28
28
B
195 200Right-handed 310
Helix 29
29
B
226 240Right-handed alpha
Helix 30
30
B
245 257Right-handed alpha
Helix 31
31
B
258 280Right-handed alpha
Helix 32
32
B
296 304Right-handed alpha
Helix 33
33
B
320 329Right-handed alpha
Helix 34
34
B
351 357Right-handed alpha
Helix 35
35
B
379 394Right-handed alpha
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There are 4 sheets in PDB entry 2GQN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
203 207anti-parallel
Strand 4
A
181 185parallel
Strand 5
A
148 154parallel
Strand 6
A
103 107parallel
Strand 7
A
128 132parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
310 315anti-parallel
Strand 3
A
370 374anti-parallel
Strand 4
A
346 350anti-parallel
Strand 5
A
335 336parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
221 225anti-parallel
Strand 3
B
203 207anti-parallel
Strand 4
B
181 185parallel
Strand 5
B
148 154parallel
Strand 6
B
103 107parallel
Strand 7
B
128 132parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 287first strand
Strand 2
B
310 315anti-parallel
Strand 3
B
370 374anti-parallel
Strand 4
B
346 350anti-parallel
Strand 5
B
335 336parallel
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