Analysis of interatomic Contacts of Structural Units in PDB entry:
2GTL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GTL entry

There are 15 chains in PDB entry 2GTL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 5PRO 151
B
LYS 1HIS 145
C
HIS 3LEU 151
D
GLU 8LYS 147
E
ASP 5PRO 151
F
LYS 1HIS 145
G
HIS 3LEU 151
H
GLU 8LYS 147
I
ASP 5PRO 151
J
LYS 1HIS 145
K
HIS 3LEU 151
L
GLU 8LYS 147
M
ARG 9TYR 225
N
LEU 10ASP 229
O
GLN 8LYS 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 2GTL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
8 23Right-handed alpha
Helix 2
2
A
27 46Right-handed alpha
Helix 3
3
A
47 57Right-handed 310
Helix 4
4
A
64 82Right-handed alpha
Helix 5
5
A
86 103Right-handed alpha
Helix 6
6
A
108 127Right-handed alpha
Helix 7
7
A
131 147Right-handed alpha
Helix 8
8
B
6 21Right-handed alpha
Helix 9
9
B
22 41Right-handed alpha
Helix 10
10
B
42 52Right-handed 310
Helix 11
11
B
58 77Right-handed alpha
Helix 12
12
B
81 97Right-handed alpha
Helix 13
13
B
102 122Right-handed alpha
Helix 14
14
B
126 143Right-handed alpha
Helix 15
15
C
8 21Right-handed alpha
Helix 16
16
C
22 25Right-handed 310
Helix 17
17
C
27 47Right-handed alpha
Helix 18
18
C
48 51Right-handed 310
Helix 19
19
C
53 58Right-handed 310
Helix 20
20
C
64 84Right-handed alpha
Helix 21
21
C
87 104Right-handed alpha
Helix 22
22
C
109 128Right-handed alpha
Helix 23
23
C
132 149Right-handed alpha
Helix 24
24
D
11 26Right-handed alpha
Helix 25
25
D
28 46Right-handed alpha
Helix 26
26
D
47 55Right-handed 310
Helix 27
27
D
63 82Right-handed alpha
Helix 28
28
D
86 103Right-handed alpha
Helix 29
29
D
108 127Right-handed alpha
Helix 30
30
D
131 145Right-handed alpha
Helix 31
31
E
8 23Right-handed alpha
Helix 32
32
E
27 46Right-handed alpha
Helix 33
33
E
47 57Right-handed 310
Helix 34
34
E
64 82Right-handed alpha
Helix 35
35
E
86 103Right-handed alpha
Helix 36
36
E
108 127Right-handed alpha
Helix 37
37
E
131 147Right-handed alpha
Helix 38
38
F
6 21Right-handed alpha
Helix 39
39
F
22 41Right-handed alpha
Helix 40
40
F
42 52Right-handed 310
Helix 41
41
F
58 77Right-handed alpha
Helix 42
42
F
81 97Right-handed alpha
Helix 43
43
F
102 122Right-handed alpha
Helix 44
44
F
126 143Right-handed alpha
Helix 45
45
G
8 21Right-handed alpha
Helix 46
46
G
22 25Right-handed 310
Helix 47
47
G
27 47Right-handed alpha
Helix 48
48
G
48 51Right-handed 310
Helix 49
49
G
53 58Right-handed 310
Helix 50
50
G
64 84Right-handed alpha
Helix 51
51
G
87 104Right-handed alpha
Helix 52
52
G
109 128Right-handed alpha
Helix 53
53
G
132 149Right-handed alpha
Helix 54
54
H
11 26Right-handed alpha
Helix 55
55
H
28 46Right-handed alpha
Helix 56
56
H
47 55Right-handed 310
Helix 57
57
H
63 82Right-handed alpha
Helix 58
58
H
86 103Right-handed alpha
Helix 59
59
H
108 127Right-handed alpha
Helix 60
60
H
131 145Right-handed alpha
Helix 61
61
I
8 23Right-handed alpha
Helix 62
62
I
27 46Right-handed alpha
Helix 63
63
I
47 57Right-handed 310
Helix 64
64
I
64 82Right-handed alpha
Helix 65
65
I
86 103Right-handed alpha
Helix 66
66
I
108 127Right-handed alpha
Helix 67
67
I
131 147Right-handed alpha
Helix 68
68
J
6 21Right-handed alpha
Helix 69
69
J
22 41Right-handed alpha
Helix 70
70
J
42 52Right-handed 310
Helix 71
71
J
58 77Right-handed alpha
Helix 72
72
J
81 97Right-handed alpha
Helix 73
73
J
102 122Right-handed alpha
Helix 74
74
J
126 143Right-handed alpha
Helix 75
75
K
8 21Right-handed alpha
Helix 76
76
K
22 25Right-handed 310
Helix 77
77
K
27 47Right-handed alpha
Helix 78
78
K
48 51Right-handed 310
Helix 79
79
K
53 58Right-handed 310
Helix 80
80
K
64 84Right-handed alpha
Helix 81
81
K
87 104Right-handed alpha
Helix 82
82
K
109 128Right-handed alpha
Helix 83
83
K
132 149Right-handed alpha
Helix 84
84
L
11 26Right-handed alpha
Helix 85
85
L
28 46Right-handed alpha
Helix 86
86
L
47 55Right-handed 310
Helix 87
87
L
63 82Right-handed alpha
Helix 88
88
L
86 103Right-handed alpha
Helix 89
89
L
108 127Right-handed alpha
Helix 90
90
L
131 145Right-handed alpha
Helix 91
91
M
13 37Right-handed alpha
Helix 92
92
M
43 56Right-handed alpha
Helix 93
93
M
80 82Right-handed 310
Helix 94
94
M
96 101Right-handed alpha
Helix 95
95
M
102 106Right-handed 310
Helix 96
96
N
10 41Right-handed alpha
Helix 97
97
N
42 59Right-handed alpha
Helix 98
98
N
96 106Right-handed 310
Helix 99
99
O
18 40Right-handed alpha
Helix 100
100
O
40 58Right-handed alpha
Helix 101
101
O
80 82Right-handed 310
Helix 102
102
O
92 97Right-handed alpha
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There are 7 sheets in PDB entry 2GTL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
66 68first strand
Strand 2
M
76 78anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
110 117first strand
Strand 2
M
126 135anti-parallel
Strand 3
M
147 154anti-parallel
Strand 4
M
162 172anti-parallel
Strand 5
M
177 182anti-parallel
Strand 6
M
192 195anti-parallel
Strand 7
M
203 210anti-parallel
Strand 8
M
215 224anti-parallel
Strand 9
M
110 117anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
66 68first strand
Strand 2
N
76 78anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
110 117first strand
Strand 2
N
126 136anti-parallel
Strand 3
N
145 152anti-parallel
Strand 4
N
166 173anti-parallel
Strand 5
N
178 183anti-parallel
Strand 6
N
192 196anti-parallel
Strand 7
N
204 210anti-parallel
Strand 8
N
217 225anti-parallel
Strand 9
N
110 117anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
154 156first strand
Strand 2
N
161 163anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
66 68first strand
Strand 2
O
76 78anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
107 115first strand
Strand 2
O
124 134anti-parallel
Strand 3
O
141 151anti-parallel
Strand 4
O
160 170anti-parallel
Strand 5
O
175 178anti-parallel
Strand 6
O
186 192anti-parallel
Strand 7
O
199 206anti-parallel
Strand 8
O
211 220anti-parallel
Strand 9
O
107 115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il