Analysis of interatomic Contacts of Structural Units in PDB entry:
2GVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GVG entry

There are 6 chains in PDB entry 2GVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 9ILE 484
B
 PHE 9ILE 484
C
 PHE 9ILE 484
D
 PHE 9ILE 484
E
 PHE 9ILE 484
F
 PHE 9ILE 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are138 helices in PDB entry 2GVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
16 25Right-handed 310
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
76 91Right-handed alpha
Helix 5
5
A
97 109Right-handed alpha
Helix 6
6
A
138 142Right-handed 310
Helix 7
7
A
148 154Right-handed alpha
Helix 8
8
A
155 181Right-handed alpha
Helix 9
9
A
185 188Right-handed 310
Helix 10
10
A
200 212Right-handed alpha
Helix 11
11
A
221 231Right-handed alpha
Helix 12
12
A
247 252Right-handed alpha
Helix 13
13
A
253 256Right-handed 310
Helix 14
14
A
257 269Right-handed alpha
Helix 15
15
A
282 289Right-handed alpha
Helix 16
16
A
295 301Right-handed alpha
Helix 17
17
A
316 332Right-handed alpha
Helix 18
18
A
357 371Right-handed alpha
Helix 19
19
A
374 376Right-handed 310
Helix 20
20
A
383 388Right-handed alpha
Helix 21
21
A
420 424Right-handed 310
Helix 22
22
A
446 450Right-handed 310
Helix 23
23
A
472 480Right-handed alpha
Helix 24
24
B
16 25Right-handed 310
Helix 25
25
B
61 70Right-handed alpha
Helix 26
26
B
76 91Right-handed alpha
Helix 27
27
B
97 109Right-handed alpha
Helix 28
28
B
138 142Right-handed 310
Helix 29
29
B
148 154Right-handed alpha
Helix 30
30
B
155 181Right-handed alpha
Helix 31
31
B
185 188Right-handed 310
Helix 32
32
B
200 212Right-handed alpha
Helix 33
33
B
221 231Right-handed alpha
Helix 34
34
B
246 252Right-handed alpha
Helix 35
35
B
253 256Right-handed 310
Helix 36
36
B
257 269Right-handed alpha
Helix 37
37
B
282 289Right-handed alpha
Helix 38
38
B
295 300Right-handed alpha
Helix 39
39
B
316 330Right-handed alpha
Helix 40
40
B
357 371Right-handed alpha
Helix 41
41
B
374 376Right-handed 310
Helix 42
42
B
383 388Right-handed alpha
Helix 43
43
B
420 424Right-handed 310
Helix 44
44
B
446 450Right-handed 310
Helix 45
45
B
472 481Right-handed alpha
Helix 46
46
C
10 14Right-handed 310
Helix 47
47
C
16 25Right-handed 310
Helix 48
48
C
61 70Right-handed alpha
Helix 49
49
C
76 91Right-handed alpha
Helix 50
50
C
97 109Right-handed alpha
Helix 51
51
C
138 142Right-handed 310
Helix 52
52
C
143 148Right-handed alpha
Helix 53
53
C
148 154Right-handed alpha
Helix 54
54
C
155 181Right-handed alpha
Helix 55
55
C
185 188Right-handed 310
Helix 56
56
C
200 212Right-handed alpha
Helix 57
57
C
221 231Right-handed alpha
Helix 58
58
C
246 252Right-handed alpha
Helix 59
59
C
254 256Right-handed 310
Helix 60
60
C
257 269Right-handed alpha
Helix 61
61
C
283 288Right-handed alpha
Helix 62
62
C
295 301Right-handed alpha
Helix 63
63
C
316 330Right-handed alpha
Helix 64
64
C
357 371Right-handed alpha
Helix 65
65
C
374 376Right-handed 310
Helix 66
66
C
383 388Right-handed alpha
Helix 67
67
C
420 424Right-handed 310
Helix 68
68
C
446 450Right-handed 310
Helix 69
69
C
472 481Right-handed alpha
Helix 70
70
D
10 14Right-handed 310
Helix 71
71
D
16 25Right-handed 310
Helix 72
72
D
61 70Right-handed alpha
Helix 73
73
D
76 92Right-handed alpha
Helix 74
74
D
97 109Right-handed alpha
Helix 75
75
D
138 142Right-handed 310
Helix 76
76
D
148 154Right-handed alpha
Helix 77
77
D
155 181Right-handed alpha
Helix 78
78
D
185 188Right-handed 310
Helix 79
79
D
200 212Right-handed alpha
Helix 80
80
D
221 231Right-handed alpha
Helix 81
81
D
246 252Right-handed alpha
Helix 82
82
D
253 256Right-handed 310
Helix 83
83
D
257 269Right-handed alpha
Helix 84
84
D
282 289Right-handed alpha
Helix 85
85
D
295 299Right-handed 310
Helix 86
86
D
316 332Right-handed alpha
Helix 87
87
D
357 371Right-handed alpha
Helix 88
88
D
374 376Right-handed 310
Helix 89
89
D
383 388Right-handed alpha
Helix 90
90
D
420 424Right-handed 310
Helix 91
91
D
446 450Right-handed 310
Helix 92
92
D
472 480Right-handed alpha
Helix 93
93
E
10 14Right-handed 310
Helix 94
94
E
16 25Right-handed 310
Helix 95
95
E
61 70Right-handed alpha
Helix 96
96
E
76 91Right-handed alpha
Helix 97
97
E
97 109Right-handed alpha
Helix 98
98
E
138 142Right-handed 310
Helix 99
99
E
148 154Right-handed alpha
Helix 100
100
E
155 181Right-handed alpha
Helix 101
101
E
185 188Right-handed 310
Helix 102
102
E
200 213Right-handed alpha
Helix 103
103
E
221 231Right-handed alpha
Helix 104
104
E
246 252Right-handed alpha
Helix 105
105
E
253 256Right-handed 310
Helix 106
106
E
257 269Right-handed alpha
Helix 107
107
E
282 289Right-handed alpha
Helix 108
108
E
295 300Right-handed alpha
Helix 109
109
E
316 332Right-handed alpha
Helix 110
110
E
357 371Right-handed alpha
Helix 111
111
E
374 376Right-handed 310
Helix 112
112
E
383 388Right-handed alpha
Helix 113
113
E
420 424Right-handed 310
Helix 114
114
E
446 450Right-handed 310
Helix 115
115
E
472 480Right-handed alpha
Helix 116
116
F
10 14Right-handed 310
Helix 117
117
F
16 22Right-handed 310
Helix 118
118
F
61 70Right-handed alpha
Helix 119
119
F
76 91Right-handed alpha
Helix 120
120
F
97 109Right-handed alpha
Helix 121
121
F
138 142Right-handed 310
Helix 122
122
F
143 148Right-handed alpha
Helix 123
123
F
148 154Right-handed alpha
Helix 124
124
F
155 181Right-handed alpha
Helix 125
125
F
185 188Right-handed 310
Helix 126
126
F
200 212Right-handed alpha
Helix 127
127
F
221 231Right-handed alpha
Helix 128
128
F
246 252Right-handed alpha
Helix 129
129
F
257 269Right-handed alpha
Helix 130
130
F
282 289Right-handed alpha
Helix 131
131
F
295 300Right-handed alpha
Helix 132
132
F
316 330Right-handed alpha
Helix 133
133
F
357 371Right-handed alpha
Helix 134
134
F
374 376Right-handed 310
Helix 135
135
F
383 388Right-handed alpha
Helix 136
136
F
420 424Right-handed 310
Helix 137
137
F
446 450Right-handed 310
Helix 138
138
F
472 481Right-handed alpha
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There are 28 sheets in PDB entry 2GVG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 412first strand
Strand 2
A
397 406anti-parallel
Strand 3
A
30 39anti-parallel
Strand 4
A
132 136anti-parallel
Strand 5
A
114 118anti-parallel
Strand 6
A
459 463anti-parallel
Strand 7
A
466 467anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
124 126anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
378 382parallel
Strand 3
A
348 352parallel
Strand 4
A
308 311parallel
Strand 5
A
274 277parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 434first strand
Strand 2
A
440 443anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 412first strand
Strand 2
B
397 406anti-parallel
Strand 3
B
30 39anti-parallel
Strand 4
B
130 136anti-parallel
Strand 5
B
114 118anti-parallel
Strand 6
B
459 463anti-parallel
Strand 7
B
466 467anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
124 126anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
378 382parallel
Strand 3
B
348 352parallel
Strand 4
B
308 311parallel
Strand 5
B
274 277parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 336first strand
Strand 2
B
342 343anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 434first strand
Strand 2
B
440 443anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
409 412first strand
Strand 2
C
397 406anti-parallel
Strand 3
C
30 39anti-parallel
Strand 4
C
130 136anti-parallel
Strand 5
C
114 118anti-parallel
Strand 6
C
459 463anti-parallel
Strand 7
C
466 467anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
124 125anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 192first strand
Strand 2
C
378 382parallel
Strand 3
C
348 352parallel
Strand 4
C
308 311parallel
Strand 5
C
274 277parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
431 434first strand
Strand 2
C
440 443anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
409 412first strand
Strand 2
D
397 406anti-parallel
Strand 3
D
30 39anti-parallel
Strand 4
D
130 136anti-parallel
Strand 5
D
114 118anti-parallel
Strand 6
D
459 463anti-parallel
Strand 7
D
466 467anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 58first strand
Strand 2
D
124 126anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
190 192first strand
Strand 2
D
378 382parallel
Strand 3
D
348 352parallel
Strand 4
D
308 311parallel
Strand 5
D
274 277parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
335 336first strand
Strand 2
D
342 343anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
431 434first strand
Strand 2
D
440 443anti-parallel
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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
409 412first strand
Strand 2
E
397 406anti-parallel
Strand 3
E
30 39anti-parallel
Strand 4
E
130 136anti-parallel
Strand 5
E
114 118anti-parallel
Strand 6
E
459 463anti-parallel
Strand 7
E
466 467anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 58first strand
Strand 2
E
124 126anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
190 192first strand
Strand 2
E
378 382parallel
Strand 3
E
348 352parallel
Strand 4
E
308 311parallel
Strand 5
E
274 277parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
335 336first strand
Strand 2
E
342 343anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
431 434first strand
Strand 2
E
440 443anti-parallel
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There are 7 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
409 412first strand
Strand 2
F
397 406anti-parallel
Strand 3
F
30 39anti-parallel
Strand 4
F
132 136anti-parallel
Strand 5
F
114 118anti-parallel
Strand 6
F
459 463anti-parallel
Strand 7
F
466 467anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
56 58first strand
Strand 2
F
124 126anti-parallel
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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
190 192first strand
Strand 2
F
378 382parallel
Strand 3
F
348 352parallel
Strand 4
F
308 311parallel
Strand 5
F
274 277parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
335 336first strand
Strand 2
F
342 343anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
431 434first strand
Strand 2
F
440 443anti-parallel
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