Analysis of interatomic Contacts of Structural Units in PDB entry:
2GVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GVY entry

There are 2 chains in PDB entry 2GVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 476
B
 ALA 1SER 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 2GVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 8Right-handed alpha
Helix 2
2
A
15 20Right-handed alpha
Helix 3
3
A
31 35Right-handed 310
Helix 4
4
A
41 48Right-handed alpha
Helix 5
5
A
48 55Right-handed alpha
Helix 6
6
A
96 110Right-handed alpha
Helix 7
7
A
128 132Right-handed 310
Helix 8
8
A
133 137Right-handed 310
Helix 9
9
A
142 146Right-handed 310
Helix 10
10
A
157 164Right-handed alpha
Helix 11
11
A
180 199Right-handed alpha
Helix 12
12
A
207 211Right-handed 310
Helix 13
13
A
212 214Right-handed 310
Helix 14
14
A
215 224Right-handed alpha
Helix 15
15
A
235 240Right-handed alpha
Helix 16
16
A
241 245Right-handed 310
Helix 17
17
A
251 263Right-handed alpha
Helix 18
18
A
268 283Right-handed alpha
Helix 19
19
A
285 288Right-handed 310
Helix 20
20
A
300 305Right-handed alpha
Helix 21
21
A
307 321Right-handed alpha
Helix 22
22
A
330 334Right-handed 310
Helix 23
23
A
346 351Right-handed 310
Helix 24
24
A
356 376Right-handed alpha
Helix 25
25
A
467 470Right-handed 310
Helix 26
26
B
2 7Right-handed alpha
Helix 27
27
B
15 20Right-handed alpha
Helix 28
28
B
31 35Right-handed 310
Helix 29
29
B
41 48Right-handed alpha
Helix 30
30
B
48 54Right-handed alpha
Helix 31
31
B
92 95Right-handed 310
Helix 32
32
B
96 110Right-handed alpha
Helix 33
33
B
128 132Right-handed 310
Helix 34
34
B
133 137Right-handed 310
Helix 35
35
B
142 146Right-handed 310
Helix 36
36
B
157 164Right-handed alpha
Helix 37
37
B
180 199Right-handed alpha
Helix 38
38
B
207 211Right-handed 310
Helix 39
39
B
212 214Right-handed 310
Helix 40
40
B
215 224Right-handed alpha
Helix 41
41
B
235 240Right-handed alpha
Helix 42
42
B
241 245Right-handed 310
Helix 43
43
B
251 263Right-handed alpha
Helix 44
44
B
268 283Right-handed alpha
Helix 45
45
B
285 288Right-handed 310
Helix 46
46
B
300 305Right-handed alpha
Helix 47
47
B
307 321Right-handed alpha
Helix 48
48
B
330 334Right-handed 310
Helix 49
49
B
346 351Right-handed 310
Helix 50
50
B
356 376Right-handed alpha
Helix 51
51
B
467 470Right-handed 310
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There are 10 sheets in PDB entry 2GVY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
226 229parallel
Strand 3
A
202 205parallel
Strand 4
A
113 118parallel
Strand 5
A
59 62parallel
Strand 6
A
11 14parallel
Strand 7
A
324 328parallel
Strand 8
A
290 291parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
84 90anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
171 173anti-parallel
Strand 3
A
166 167anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 390first strand
Strand 2
A
393 398anti-parallel
Strand 3
A
405 410anti-parallel
Strand 4
A
461 465anti-parallel
Strand 5
A
433 436anti-parallel
Strand 6
A
441 444anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 423first strand
Strand 2
A
451 455anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 249first strand
Strand 2
B
226 229parallel
Strand 3
B
202 205parallel
Strand 4
B
113 118parallel
Strand 5
B
59 62parallel
Strand 6
B
11 14parallel
Strand 7
B
324 328parallel
Strand 8
B
290 291parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
84 90anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
171 173anti-parallel
Strand 3
B
166 167anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 390first strand
Strand 2
B
393 398anti-parallel
Strand 3
B
405 410anti-parallel
Strand 4
B
461 465anti-parallel
Strand 5
B
433 436anti-parallel
Strand 6
B
441 444anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 423first strand
Strand 2
B
451 455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il