Analysis of interatomic Contacts of Structural Units in PDB entry:
2GY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GY7 entry

There are 2 chains in PDB entry 2GY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 280ASP 495
B
 ALA 23PRO 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2GY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
283 290Right-handed alpha
Helix 2
2
A
340 345Right-handed alpha
Helix 3
3
A
356 366Right-handed alpha
Helix 4
4
A
436 442Right-handed alpha
Helix 5
5
A
461 465Right-handed 310
Helix 6
6
A
474 478Right-handed 310
Helix 7
7
B
166 170Right-handed 310
Helix 8
8
B
182 186Right-handed 310
Helix 9
9
B
308 312Right-handed 310
Helix 10
10
B
379 381Right-handed 310
Helix 11
11
B
415 419Right-handed 310
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There are 15 sheets in PDB entry 2GY7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 301first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
323 326anti-parallel
Strand 4
A
486 491anti-parallel
Strand 5
A
369 377anti-parallel
Strand 6
A
381 391anti-parallel
Strand 7
A
402 408anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
83 88anti-parallel
Strand 3
B
40 46anti-parallel
Strand 4
B
26 31anti-parallel
Strand 5
B
277 281anti-parallel
Strand 6
B
286 289anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
115 119parallel
Strand 3
B
98 101anti-parallel
Strand 4
B
58 59anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
144 145anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
205 209parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
153 157anti-parallel
Strand 5
B
160 165anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
177 178anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
222 223anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
240 241anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 247first strand
Strand 2
B
253 254anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
266 267anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 324first strand
Strand 2
B
328 329anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 336first strand
Strand 2
B
342 343anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
411 414anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
405 408anti-parallel
Strand 3
B
397 398anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
383 386anti-parallel
Strand 3
B
420 428anti-parallel
Strand 4
B
431 439anti-parallel
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