Analysis of interatomic Contacts of Structural Units in PDB entry:
2GYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GYI entry

There are 2 chains in PDB entry 2GYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 2ARG 386
B
 TYR 2ARG 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 2GYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
14 19Right-handed alpha
Helix 2
H2
A
35 45Right-handed alpha
Helix 3
H3
A
64 81Right-handed alpha
Helix 4
H4
A
108 128Right-handed alpha
Helix 5
H5
A
150 171Right-handed alpha
Helix 6
H6
A
195 204Right-handed alpha
Helix 7
H7
A
217 223Right-handed alpha
Helix 8
H8
A
227 237Right-handed alpha
Helix 9
H9
A
265 276Right-handed alpha
Helix 10
H10
A
295 321Right-handed alpha
Helix 11
H11
A
324 331Right-handed alpha
Helix 12
H12
A
334 338Right-handed alpha
Helix 13
H13
A
346 352Right-handed alpha
Helix 14
H14
A
361 366Right-handed alpha
Helix 15
H15
A
371 382Right-handed alpha
Helix 16
H16
B
14 19Right-handed alpha
Helix 17
H17
B
35 45Right-handed alpha
Helix 18
H18
B
64 81Right-handed alpha
Helix 19
H19
B
108 128Right-handed alpha
Helix 20
H20
B
150 171Right-handed alpha
Helix 21
H21
B
195 204Right-handed alpha
Helix 22
H22
B
217 223Right-handed alpha
Helix 23
H23
B
227 237Right-handed alpha
Helix 24
H24
B
265 276Right-handed alpha
Helix 25
H25
B
295 321Right-handed alpha
Helix 26
H26
B
324 331Right-handed alpha
Helix 27
H27
B
334 338Right-handed alpha
Helix 28
H28
B
346 352Right-handed alpha
Helix 29
H29
B
361 366Right-handed alpha
Helix 30
H30
B
371 382Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2GYI. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 9 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
49 53parallel
Strand 3
A
84 90parallel
Strand 4
A
132 143parallel
Strand 5
A
176 183parallel
Strand 6
A
211 216parallel
Strand 7
A
241 246parallel
Strand 8
A
278 286parallel
Strand 9
A
10 13parallel
Back to list of sheets
Back to top of page

There are 9 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
49 53parallel
Strand 3
B
84 90parallel
Strand 4
B
132 143parallel
Strand 5
B
176 183parallel
Strand 6
B
211 216parallel
Strand 7
B
241 246parallel
Strand 8
B
278 286parallel
Strand 9
B
10 13parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il