Analysis of interatomic Contacts of Structural Units in PDB entry:
2H00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2H00 entry

There are 3 chains in PDB entry 2H00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5ASP 254
B
 ASN 8TYR 253
C
 LEU 7ASP 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2H00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 28Right-handed alpha
Helix 2
2
A
41 57Right-handed alpha
Helix 3
3
A
60 64Right-handed 310
Helix 4
4
A
78 89Right-handed alpha
Helix 5
5
A
98 112Right-handed alpha
Helix 6
6
A
181 186Right-handed alpha
Helix 7
7
A
186 202Right-handed alpha
Helix 8
8
A
203 205Right-handed 310
Helix 9
9
A
217 228Right-handed alpha
Helix 10
10
B
11 28Right-handed alpha
Helix 11
11
B
41 57Right-handed alpha
Helix 12
12
B
78 89Right-handed alpha
Helix 13
13
B
98 112Right-handed alpha
Helix 14
14
B
186 202Right-handed alpha
Helix 15
15
B
214 216Right-handed 310
Helix 16
16
B
217 228Right-handed alpha
Helix 17
17
C
11 28Right-handed alpha
Helix 18
18
C
41 57Right-handed alpha
Helix 19
19
C
78 89Right-handed alpha
Helix 20
20
C
98 111Right-handed alpha
Helix 21
21
C
185 202Right-handed alpha
Helix 22
22
C
214 216Right-handed 310
Helix 23
23
C
217 228Right-handed alpha
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There are 4 sheets in PDB entry 2H00. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
91 96parallel
Strand 3
A
68 72parallel
Strand 4
A
143 146parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
243 251anti-parallel
Strand 3
A
232 240anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
91 96parallel
Strand 3
B
68 72parallel
Strand 4
B
141 146parallel
Strand 5
B
205 212parallel
Strand 6
B
243 251anti-parallel
Strand 7
B
232 240anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 122first strand
Strand 2
C
91 96parallel
Strand 3
C
68 72parallel
Strand 4
C
141 146parallel
Strand 5
C
205 212parallel
Strand 6
C
243 251anti-parallel
Strand 7
C
232 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il