Analysis of interatomic Contacts of Structural Units in PDB entry:
2HDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HDV entry

There are 2 chains in PDB entry 2HDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 518SER 627
B
 GLN 520SER 627
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 2HDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
521 525Right-handed 310
Helix 2
2
A
533 543Right-handed alpha
Helix 3
3
A
544 549Right-handed 310
Helix 4
4
A
596 605Right-handed alpha
Helix 5
5
B
533 543Right-handed alpha
Helix 6
6
B
544 549Right-handed 310
Helix 7
7
B
596 604Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2HDV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 531first strand
Strand 2
A
551 556parallel
Strand 3
A
563 570anti-parallel
Strand 4
A
573 581anti-parallel
Strand 5
A
587 589anti-parallel
Strand 6
A
592 594anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 531first strand
Strand 2
A
551 556parallel
Strand 3
A
623 624parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
528 531first strand
Strand 2
B
551 556parallel
Strand 3
B
563 570anti-parallel
Strand 4
B
573 581anti-parallel
Strand 5
B
587 589anti-parallel
Strand 6
B
592 594anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
528 531first strand
Strand 2
B
551 556parallel
Strand 3
B
623 624parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il