Analysis of interatomic Contacts of Structural Units in PDB entry:
2HKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HKD entry

There is 1 chain in PDB entry 2HKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 28LYS 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2HKD. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
333 341Right-handed alpha
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There are 3 sheets in PDB entry 2HKD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
52 58anti-parallel
Strand 4
A
61 67anti-parallel
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There are 18 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
85 90anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
A
109 116anti-parallel
Strand 5
A
121 126anti-parallel
Strand 6
A
132 138anti-parallel
Strand 7
A
144 149anti-parallel
Strand 8
A
155 161anti-parallel
Strand 9
A
167 172anti-parallel
Strand 10
A
178 184anti-parallel
Strand 11
A
190 195anti-parallel
Strand 12
A
201 207anti-parallel
Strand 13
A
213 217anti-parallel
Strand 14
A
225 231anti-parallel
Strand 15
A
234 240anti-parallel
Strand 16
A
245 251anti-parallel
Strand 17
A
254 260anti-parallel
Strand 18
A
266 272anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 286first strand
Strand 2
A
291 296anti-parallel
Strand 3
A
299 306anti-parallel
Strand 4
A
312 316anti-parallel
Strand 5
A
329 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il