Analysis of interatomic Contacts of Structural Units in PDB entry:
2HKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HKF entry

There are 3 chains in PDB entry 2HKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ASP 1CYS 219
H
 GLU 1PRO 218
P
 LEU 1GLY 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2HKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
84 88Right-handed 310
Helix 2
2
L
126 132Right-handed alpha
Helix 3
3
L
188 194Right-handed alpha
Helix 4
4
L
217 219Right-handed 310
Helix 5
5
H
53 57Right-handed 310
Helix 6
6
H
76 78Right-handed 310
Helix 7
7
H
89 93Right-handed 310
Helix 8
8
H
206 209Right-handed 310
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There are 9 sheets in PDB entry 2HKF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
75 80anti-parallel
Strand 4
L
67 72anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
107 111parallel
Strand 3
L
89 95anti-parallel
Strand 4
L
38 43anti-parallel
Strand 5
L
50 54anti-parallel
Strand 6
L
58 59anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
107 111parallel
Strand 3
L
89 95anti-parallel
Strand 4
L
102 103anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
119 123first strand
Strand 2
L
134 144anti-parallel
Strand 3
L
178 187anti-parallel
Strand 4
L
164 168anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
158 160first strand
Strand 2
L
150 155anti-parallel
Strand 3
L
196 203anti-parallel
Strand 4
L
206 215anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
80 85anti-parallel
Strand 4
H
70 75anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
113 117parallel
Strand 3
H
94 101anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
60 62anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
126 130first strand
Strand 2
H
141 151anti-parallel
Strand 3
H
180 190anti-parallel
Strand 4
H
169 177anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
157 160first strand
Strand 2
H
200 205anti-parallel
Strand 3
H
210 215anti-parallel
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