Analysis of interatomic Contacts of Structural Units in PDB entry:
2HMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HMY entry

There is 1 chain in PDB entry 2HMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1TYR 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2HMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
23 31Right-handed alpha
Helix 2
2
B
43 52Right-handed alpha
Helix 3
3
B
61 63Right-handed 310
Helix 4
4
B
66 68Right-handed 310
Helix 5
5
B
93 96Right-handed 310
Helix 6
6
B
101 111Right-handed alpha
Helix 7
7
B
122 124Right-handed 310
Helix 8
8
B
127 143Right-handed 310
Helix 9
9
B
154 156Right-handed 310
Helix 10
10
B
173 175Right-handed 310
Helix 11
11
B
192 194Right-handed 310
Helix 12
12
B
199 205Right-handed 310
Helix 13
13
B
276 283Right-handed alpha
Helix 14
14
B
295 304Right-handed alpha
Helix 15
15
B
308 323Right-handed alpha
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There are 3 sheets in PDB entry 2HMY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 153first strand
Strand 2
B
164 171anti-parallel
Strand 3
B
115 121anti-parallel
Strand 4
B
74 77parallel
Strand 5
B
13 17parallel
Strand 6
B
34 39parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
270 273anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 231first strand
Strand 2
B
240 242anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il