Analysis of interatomic Contacts of Structural Units in PDB entry:
2I0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2I0J entry

There are 4 chains in PDB entry 2I0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 306MET 528
B
LEU 306HIS 547
C
LEU 306MET 528
D
LEU 306HIS 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 2I0J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
306 310Right-handed 310
Helix 2
2
A
311 323Right-handed alpha
Helix 3
3
A
341 362Right-handed alpha
Helix 4
4
A
371 395Right-handed alpha
Helix 5
5
A
413 418Right-handed 310
Helix 6
6
A
420 439Right-handed alpha
Helix 7
7
A
441 457Right-handed alpha
Helix 8
8
A
458 461Right-handed 310
Helix 9
9
A
465 493Right-handed alpha
Helix 10
10
A
496 526Right-handed alpha
Helix 11
11
B
306 310Right-handed 310
Helix 12
12
B
311 323Right-handed alpha
Helix 13
13
B
341 364Right-handed alpha
Helix 14
14
B
371 395Right-handed alpha
Helix 15
15
B
413 418Right-handed 310
Helix 16
16
B
420 439Right-handed alpha
Helix 17
17
B
441 457Right-handed alpha
Helix 18
18
B
458 460Right-handed 310
Helix 19
19
B
465 493Right-handed alpha
Helix 20
20
B
496 527Right-handed alpha
Helix 21
21
B
535 545Right-handed alpha
Helix 22
22
C
306 310Right-handed 310
Helix 23
23
C
311 323Right-handed alpha
Helix 24
24
C
341 362Right-handed alpha
Helix 25
25
C
371 395Right-handed alpha
Helix 26
26
C
413 418Right-handed 310
Helix 27
27
C
420 439Right-handed alpha
Helix 28
28
C
441 457Right-handed alpha
Helix 29
29
C
458 461Right-handed 310
Helix 30
30
C
465 493Right-handed alpha
Helix 31
31
C
496 528Right-handed alpha
Helix 32
32
D
306 310Right-handed 310
Helix 33
33
D
311 323Right-handed alpha
Helix 34
34
D
341 364Right-handed alpha
Helix 35
35
D
371 395Right-handed alpha
Helix 36
36
D
413 418Right-handed 310
Helix 37
37
D
420 439Right-handed alpha
Helix 38
38
D
441 457Right-handed alpha
Helix 39
39
D
458 461Right-handed 310
Helix 40
40
D
465 493Right-handed alpha
Helix 41
41
D
496 527Right-handed alpha
Helix 42
42
D
536 545Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2I0J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
401 405first strand
Strand 2
C
408 411anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
401 405first strand
Strand 2
D
408 411anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il