Analysis of interatomic Contacts of Structural Units in PDB entry:
2IDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IDJ entry

There are 4 chains in PDB entry 2IDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLY 292
B
 VAL 1GLY 292
C
 ASP 2GLY 292
D
 VAL 1GLY 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2IDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
41 54Right-handed alpha
Helix 3
3
A
68 77Right-handed alpha
Helix 4
4
A
87 101Right-handed alpha
Helix 5
5
A
104 109Right-handed alpha
Helix 6
6
A
116 118Right-handed 310
Helix 7
7
A
119 124Right-handed alpha
Helix 8
8
A
139 143Right-handed 310
Helix 9
9
A
150 163Right-handed alpha
Helix 10
10
A
176 184Right-handed alpha
Helix 11
11
A
246 256Right-handed alpha
Helix 12
12
B
24 36Right-handed alpha
Helix 13
13
B
41 55Right-handed alpha
Helix 14
14
B
68 77Right-handed alpha
Helix 15
15
B
87 101Right-handed alpha
Helix 16
16
B
104 109Right-handed alpha
Helix 17
17
B
116 118Right-handed 310
Helix 18
18
B
119 124Right-handed alpha
Helix 19
19
B
139 143Right-handed 310
Helix 20
20
B
150 162Right-handed alpha
Helix 21
21
B
176 184Right-handed alpha
Helix 22
22
B
246 257Right-handed alpha
Helix 23
23
C
24 36Right-handed alpha
Helix 24
24
C
41 54Right-handed alpha
Helix 25
25
C
68 77Right-handed alpha
Helix 26
26
C
87 101Right-handed alpha
Helix 27
27
C
104 109Right-handed alpha
Helix 28
28
C
116 118Right-handed 310
Helix 29
29
C
119 124Right-handed alpha
Helix 30
30
C
139 143Right-handed 310
Helix 31
31
C
150 162Right-handed alpha
Helix 32
32
C
176 184Right-handed alpha
Helix 33
33
C
246 257Right-handed alpha
Helix 34
34
D
24 36Right-handed alpha
Helix 35
35
D
41 55Right-handed alpha
Helix 36
36
D
68 77Right-handed alpha
Helix 37
37
D
87 101Right-handed alpha
Helix 38
38
D
104 109Right-handed alpha
Helix 39
39
D
116 118Right-handed 310
Helix 40
40
D
119 124Right-handed alpha
Helix 41
41
D
139 143Right-handed 310
Helix 42
42
D
150 162Right-handed alpha
Helix 43
43
D
176 184Right-handed alpha
Helix 44
44
D
246 257Right-handed alpha
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There are 10 sheets in PDB entry 2IDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
C
4 6anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
80 85parallel
Strand 3
A
59 62parallel
Strand 4
A
130 135parallel
Strand 5
A
164 175parallel
Strand 6
A
283 290anti-parallel
Strand 7
A
262 263anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
80 85parallel
Strand 3
A
59 62parallel
Strand 4
A
130 135parallel
Strand 5
A
164 175parallel
Strand 6
A
283 290anti-parallel
Strand 7
A
266 268anti-parallel
Strand 8
A
271 272anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 242first strand
Strand 2
A
212 222anti-parallel
Strand 3
A
201 209anti-parallel
Strand 4
C
201 209anti-parallel
Strand 5
C
212 222anti-parallel
Strand 6
C
236 242anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
D
5 6anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
80 85parallel
Strand 3
B
59 62parallel
Strand 4
B
130 135parallel
Strand 5
B
164 175parallel
Strand 6
B
283 290anti-parallel
Strand 7
B
262 268anti-parallel
Strand 8
B
271 272anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 242first strand
Strand 2
B
212 222anti-parallel
Strand 3
B
200 209anti-parallel
Strand 4
D
200 209anti-parallel
Strand 5
D
212 224anti-parallel
Strand 6
D
234 242anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 114first strand
Strand 2
C
80 85parallel
Strand 3
C
59 62parallel
Strand 4
C
130 135parallel
Strand 5
C
164 175parallel
Strand 6
C
283 290anti-parallel
Strand 7
C
262 263anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 114first strand
Strand 2
C
80 85parallel
Strand 3
C
59 62parallel
Strand 4
C
130 135parallel
Strand 5
C
164 175parallel
Strand 6
C
283 290anti-parallel
Strand 7
C
266 268anti-parallel
Strand 8
C
271 272anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 114first strand
Strand 2
D
80 85parallel
Strand 3
D
59 62parallel
Strand 4
D
130 135parallel
Strand 5
D
164 175parallel
Strand 6
D
283 290anti-parallel
Strand 7
D
262 268anti-parallel
Strand 8
D
271 272anti-parallel
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