Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0F entry

There are 4 chains in PDB entry 2J0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 34PRO 479
B
 LYS 34PRO 479
C
 LYS 34PRO 479
D
 LYS 34PRO 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 2J0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 45Right-handed alpha
Helix 2
2
A
50 64Right-handed alpha
Helix 3
3
A
67 82Right-handed alpha
Helix 4
4
A
84 97Right-handed alpha
Helix 5
5
A
105 109Right-handed 310
Helix 6
6
A
124 136Right-handed alpha
Helix 7
7
A
153 159Right-handed alpha
Helix 8
8
A
169 180Right-handed alpha
Helix 9
9
A
192 205Right-handed alpha
Helix 10
10
A
210 225Right-handed alpha
Helix 11
11
A
244 262Right-handed alpha
Helix 12
12
A
283 295Right-handed alpha
Helix 13
13
A
299 317Right-handed alpha
Helix 14
14
A
322 336Right-handed alpha
Helix 15
15
A
337 350Right-handed alpha
Helix 16
16
A
353 362Right-handed alpha
Helix 17
17
A
364 372Right-handed alpha
Helix 18
18
A
393 404Right-handed alpha
Helix 19
19
A
448 457Right-handed alpha
Helix 20
20
B
35 45Right-handed alpha
Helix 21
21
B
50 64Right-handed alpha
Helix 22
22
B
67 82Right-handed alpha
Helix 23
23
B
84 98Right-handed alpha
Helix 24
24
B
105 109Right-handed 310
Helix 25
25
B
124 136Right-handed alpha
Helix 26
26
B
153 159Right-handed alpha
Helix 27
27
B
169 180Right-handed alpha
Helix 28
28
B
192 205Right-handed alpha
Helix 29
29
B
210 225Right-handed alpha
Helix 30
30
B
244 262Right-handed alpha
Helix 31
31
B
283 295Right-handed alpha
Helix 32
32
B
299 317Right-handed alpha
Helix 33
33
B
322 336Right-handed alpha
Helix 34
34
B
337 350Right-handed alpha
Helix 35
35
B
353 362Right-handed alpha
Helix 36
36
B
364 372Right-handed alpha
Helix 37
37
B
393 404Right-handed alpha
Helix 38
38
B
448 457Right-handed alpha
Helix 39
39
C
35 45Right-handed alpha
Helix 40
40
C
50 63Right-handed alpha
Helix 41
41
C
67 82Right-handed alpha
Helix 42
42
C
84 97Right-handed alpha
Helix 43
43
C
105 109Right-handed 310
Helix 44
44
C
124 136Right-handed alpha
Helix 45
45
C
153 159Right-handed alpha
Helix 46
46
C
169 180Right-handed alpha
Helix 47
47
C
192 204Right-handed alpha
Helix 48
48
C
210 225Right-handed alpha
Helix 49
49
C
244 262Right-handed alpha
Helix 50
50
C
283 295Right-handed alpha
Helix 51
51
C
299 317Right-handed alpha
Helix 52
52
C
322 336Right-handed alpha
Helix 53
53
C
337 350Right-handed alpha
Helix 54
54
C
353 363Right-handed alpha
Helix 55
55
C
364 372Right-handed alpha
Helix 56
56
C
393 404Right-handed alpha
Helix 57
57
C
448 457Right-handed alpha
Helix 58
58
D
35 45Right-handed alpha
Helix 59
59
D
50 64Right-handed alpha
Helix 60
60
D
67 82Right-handed alpha
Helix 61
61
D
84 97Right-handed alpha
Helix 62
62
D
105 109Right-handed 310
Helix 63
63
D
124 136Right-handed alpha
Helix 64
64
D
153 159Right-handed alpha
Helix 65
65
D
169 180Right-handed alpha
Helix 66
66
D
192 204Right-handed alpha
Helix 67
67
D
210 225Right-handed alpha
Helix 68
68
D
245 262Right-handed alpha
Helix 69
69
D
283 295Right-handed alpha
Helix 70
70
D
299 317Right-handed alpha
Helix 71
71
D
322 336Right-handed alpha
Helix 72
72
D
337 350Right-handed alpha
Helix 73
73
D
353 362Right-handed alpha
Helix 74
74
D
364 372Right-handed alpha
Helix 75
75
D
393 404Right-handed alpha
Helix 76
76
D
448 457Right-handed alpha
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There are 16 sheets in PDB entry 2J0F. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
229 235parallel
Strand 3
A
266 272parallel
Strand 4
A
473 477anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
182 185parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
420 423anti-parallel
Strand 3
A
436 442anti-parallel
Strand 4
A
377 382anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 431first strand
Strand 2
A
387 392anti-parallel
Strand 3
A
459 462anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
229 236parallel
Strand 3
B
266 272parallel
Strand 4
B
475 477anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 143first strand
Strand 2
B
182 185parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 282first strand
Strand 2
B
420 423anti-parallel
Strand 3
B
436 442anti-parallel
Strand 4
B
377 382anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 431first strand
Strand 2
B
387 392anti-parallel
Strand 3
B
459 462anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 117first strand
Strand 2
C
229 236parallel
Strand 3
C
266 272parallel
Strand 4
C
475 477anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 143first strand
Strand 2
C
182 185parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
280 282first strand
Strand 2
C
420 423anti-parallel
Strand 3
C
436 442anti-parallel
Strand 4
C
377 382anti-parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
430 431first strand
Strand 2
C
387 392anti-parallel
Strand 3
C
459 462anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 117first strand
Strand 2
D
229 236parallel
Strand 3
D
266 272parallel
Strand 4
D
475 477anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 143first strand
Strand 2
D
182 185parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
280 282first strand
Strand 2
D
420 423anti-parallel
Strand 3
D
436 442anti-parallel
Strand 4
D
377 382anti-parallel
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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
430 431first strand
Strand 2
D
387 392anti-parallel
Strand 3
D
459 462anti-parallel
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