Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0Q entry

There are 10 chains in PDB entry 2J0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 22ILE 411
B
 ASP 22ILE 411
C
 ASP 4ILE 146
D
 PRO 66PRO 154
E
 U 1 U 6
F
 ASP 4ILE 146
G
 PRO 66PRO 154
H
 U 1 U 6
I
 LYS 168HIS 248
T
 LYS 168HIS 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 2J0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 44Right-handed 310
Helix 2
2
A
46 57Right-handed alpha
Helix 3
3
A
62 74Right-handed alpha
Helix 4
4
A
87 100Right-handed alpha
Helix 5
5
A
115 130Right-handed alpha
Helix 6
6
A
131 133Right-handed 310
Helix 7
7
A
145 156Right-handed alpha
Helix 8
8
A
163 173Right-handed alpha
Helix 9
9
A
188 193Right-handed alpha
Helix 10
10
A
197 208Right-handed alpha
Helix 11
11
A
222 229Right-handed alpha
Helix 12
12
A
230 232Right-handed 310
Helix 13
13
A
242 246Right-handed 310
Helix 14
14
A
262 276Right-handed alpha
Helix 15
15
A
286 300Right-handed alpha
Helix 16
16
A
312 325Right-handed alpha
Helix 17
17
A
335 338Right-handed 310
Helix 18
18
A
357 366Right-handed alpha
Helix 19
19
A
382 384Right-handed 310
Helix 20
20
A
385 396Right-handed alpha
Helix 21
21
B
22 26Right-handed 310
Helix 22
22
B
40 44Right-handed 310
Helix 23
23
B
46 57Right-handed alpha
Helix 24
24
B
62 74Right-handed alpha
Helix 25
25
B
87 99Right-handed alpha
Helix 26
26
B
115 130Right-handed alpha
Helix 27
27
B
131 133Right-handed 310
Helix 28
28
B
145 156Right-handed alpha
Helix 29
29
B
163 173Right-handed alpha
Helix 30
30
B
188 193Right-handed alpha
Helix 31
31
B
197 208Right-handed alpha
Helix 32
32
B
222 229Right-handed alpha
Helix 33
33
B
230 232Right-handed 310
Helix 34
34
B
262 276Right-handed alpha
Helix 35
35
B
286 300Right-handed alpha
Helix 36
36
B
312 325Right-handed alpha
Helix 37
37
B
335 338Right-handed 310
Helix 38
38
B
357 366Right-handed alpha
Helix 39
39
B
382 384Right-handed 310
Helix 40
40
B
385 396Right-handed alpha
Helix 41
41
C
39 43Right-handed 310
Helix 42
42
C
53 68Right-handed alpha
Helix 43
43
C
69 72Right-handed 310
Helix 44
44
C
106 112Right-handed alpha
Helix 45
45
C
115 142Right-handed alpha
Helix 46
46
D
86 95Right-handed alpha
Helix 47
47
D
123 135Right-handed alpha
Helix 48
48
F
39 43Right-handed 310
Helix 49
49
F
53 68Right-handed alpha
Helix 50
50
F
69 72Right-handed 310
Helix 51
51
F
106 113Right-handed alpha
Helix 52
52
F
115 141Right-handed alpha
Helix 53
53
G
86 95Right-handed alpha
Helix 54
54
G
123 135Right-handed alpha
Helix 55
55
I
171 175Right-handed 310
Helix 56
56
I
224 229Right-handed 310
Helix 57
57
I
232 241Right-handed alpha
Helix 58
58
T
224 228Right-handed 310
Helix 59
59
T
232 241Right-handed alpha
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There are 8 sheets in PDB entry 2J0Q. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, A, FA, GA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
159 162parallel
Strand 3
A
108 112parallel
Strand 4
A
181 187parallel
Strand 5
A
213 218parallel
Strand 6
A
78 81parallel
Strand 7
A
237 239parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
330 333parallel
Strand 3
A
279 283parallel
Strand 4
A
346 351parallel
Strand 5
A
375 381parallel
Strand 6
A
251 257parallel
Strand 7
A
401 402parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 140first strand
Strand 2
B
159 162parallel
Strand 3
B
109 112parallel
Strand 4
B
183 187parallel
Strand 5
B
213 218parallel
Strand 6
B
78 81parallel
Strand 7
B
237 239parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 307first strand
Strand 2
B
330 333parallel
Strand 3
B
279 283parallel
Strand 4
B
346 351parallel
Strand 5
B
375 381parallel
Strand 6
B
251 257parallel
Strand 7
B
401 402parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 102first strand
Strand 2
C
85 92anti-parallel
Strand 3
C
5 15anti-parallel
Strand 4
C
18 27anti-parallel
Strand 5
C
31 37anti-parallel
Strand 6
C
46 52anti-parallel
Strand 7
D
150 151anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 103first strand
Strand 2
D
116 121anti-parallel
Strand 3
D
73 78anti-parallel
Strand 4
D
145 148anti-parallel
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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
95 102first strand
Strand 2
F
85 92anti-parallel
Strand 3
F
5 15anti-parallel
Strand 4
F
18 27anti-parallel
Strand 5
F
31 37anti-parallel
Strand 6
F
46 52anti-parallel
Strand 7
G
150 151anti-parallel
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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
101 103first strand
Strand 2
G
116 121anti-parallel
Strand 3
G
73 78anti-parallel
Strand 4
G
145 148anti-parallel
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