Analysis of interatomic Contacts of Structural Units in PDB entry:
2J17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J17 entry

There are 2 chains in PDB entry 2J17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 47LYS 197
B
 CYS 47LYS 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2J17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 80Right-handed 310
Helix 2
2
A
114 117Right-handed 310
Helix 3
3
A
118 132Right-handed alpha
Helix 4
4
A
145 159Right-handed alpha
Helix 5
5
A
162 174Right-handed alpha
Helix 6
6
A
180 196Right-handed alpha
Helix 7
7
B
76 80Right-handed 310
Helix 8
8
B
114 117Right-handed 310
Helix 9
9
B
118 132Right-handed alpha
Helix 10
10
B
145 159Right-handed alpha
Helix 11
11
B
162 172Right-handed alpha
Helix 12
12
B
180 196Right-handed alpha
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There are 2 sheets in PDB entry 2J17. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
68 71anti-parallel
Strand 3
A
136 139parallel
Strand 4
A
84 87parallel
Strand 5
A
103 106parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
68 71anti-parallel
Strand 3
B
136 139parallel
Strand 4
B
84 87parallel
Strand 5
B
103 106parallel
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