Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J3R entry

There are 2 chains in PDB entry 2J3R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 10GLU 172
B
PRO 20GLU 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2J3R. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
16 34Right-handed alpha
Helix 2
2
A
36 62Right-handed alpha
Helix 3
3
A
70 81Right-handed alpha
Helix 4
4
A
81 88Right-handed alpha
Helix 5
5
A
129 142Right-handed alpha
Helix 6
6
B
26 43Right-handed alpha
Helix 7
7
B
46 74Right-handed alpha
Helix 8
8
B
81 91Right-handed alpha
Helix 9
9
B
91 99Right-handed alpha
Helix 10
10
B
122 128Right-handed 310
Helix 11
11
B
137 153Right-handed alpha
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There are 3 sheets in PDB entry 2J3R. Click on sheet of interest to get list of strands forming it: AA, AB, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
13 15first strand
Strand 2
B
23 25anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
92 94first strand
Strand 2
A
102 107anti-parallel
Strand 3
A
161 170anti-parallel
Strand 4
A
144 150anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
104 107first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
168 174anti-parallel
Strand 4
B
158 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il