Analysis of interatomic Contacts of Structural Units in PDB entry:
2J40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J40 entry

There are 4 chains in PDB entry 2J40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 321
A
 SER 323PHE 516
B
 MET 1LYS 321
B
 SER 323PHE 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 2J40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 32Right-handed alpha
Helix 2
2
A
72 91Right-handed alpha
Helix 3
3
A
94 112Right-handed alpha
Helix 4
4
A
112 125Right-handed alpha
Helix 5
5
A
127 149Right-handed alpha
Helix 6
6
A
150 153Right-handed 310
Helix 7
7
A
187 200Right-handed alpha
Helix 8
8
A
209 211Right-handed 310
Helix 9
9
A
212 227Right-handed alpha
Helix 10
10
A
242 249Right-handed alpha
Helix 11
11
A
261 273Right-handed alpha
Helix 12
12
A
302 316Right-handed alpha
Helix 13
13
A
317 320Right-handed 310
Helix 14
14
A
334 347Right-handed alpha
Helix 15
15
A
353 357Right-handed 310
Helix 16
16
A
365 380Right-handed alpha
Helix 17
17
A
411 415Right-handed 310
Helix 18
18
A
430 440Right-handed alpha
Helix 19
19
A
453 464Right-handed alpha
Helix 20
20
A
488 491Right-handed 310
Helix 21
21
A
500 505Right-handed alpha
Helix 22
22
B
16 33Right-handed alpha
Helix 23
23
B
72 91Right-handed alpha
Helix 24
24
B
94 112Right-handed alpha
Helix 25
25
B
112 125Right-handed alpha
Helix 26
26
B
127 151Right-handed alpha
Helix 27
27
B
187 200Right-handed alpha
Helix 28
28
B
209 211Right-handed 310
Helix 29
29
B
212 227Right-handed alpha
Helix 30
30
B
242 250Right-handed alpha
Helix 31
31
B
261 273Right-handed alpha
Helix 32
32
B
302 316Right-handed alpha
Helix 33
33
B
317 320Right-handed 310
Helix 34
34
B
334 348Right-handed alpha
Helix 35
35
B
353 357Right-handed 310
Helix 36
36
B
365 383Right-handed alpha
Helix 37
37
B
411 415Right-handed 310
Helix 38
38
B
430 440Right-handed alpha
Helix 39
39
B
453 464Right-handed alpha
Helix 40
40
B
488 491Right-handed 310
Helix 41
41
B
500 505Right-handed alpha
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There are 8 sheets in PDB entry 2J40. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
64 69parallel
Strand 3
A
52 56anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
45 47anti-parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 173first strand
Strand 2
A
507 515anti-parallel
Strand 3
B
468 471parallel
Strand 4
B
446 450parallel
Strand 5
B
293 297parallel
Strand 6
B
325 331parallel
Strand 7
B
422 428parallel
Strand 8
B
402 405parallel
Strand 9
B
384 387anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
203 207parallel
Strand 3
A
176 180parallel
Strand 4
A
255 259parallel
Strand 5
A
284 288parallel
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There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 387first strand
Strand 2
A
402 405anti-parallel
Strand 3
A
422 428parallel
Strand 4
A
325 331parallel
Strand 5
A
293 297parallel
Strand 6
A
446 450parallel
Strand 7
A
468 471parallel
Strand 8
B
507 515parallel
Strand 9
B
165 173anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
60 69parallel
Strand 3
B
52 57anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
45 47anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
203 207parallel
Strand 3
B
176 180parallel
Strand 4
B
255 259parallel
Strand 5
B
284 288parallel
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