Analysis of interatomic Contacts of Structural Units in PDB entry:
2J4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J4Z entry

There are 2 chains in PDB entry 2J4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 126LYS 389
B
 ARG 126ASN 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2J4Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 131Right-handed 310
Helix 2
2
A
166 172Right-handed alpha
Helix 3
3
A
174 187Right-handed alpha
Helix 4
4
A
217 226Right-handed alpha
Helix 5
5
A
229 250Right-handed alpha
Helix 6
6
A
258 260Right-handed 310
Helix 7
7
A
294 296Right-handed 310
Helix 8
8
A
297 302Right-handed alpha
Helix 9
9
A
309 325Right-handed alpha
Helix 10
10
A
333 343Right-handed alpha
Helix 11
11
A
353 364Right-handed alpha
Helix 12
12
A
367 371Right-handed 310
Helix 13
13
A
373 379Right-handed alpha
Helix 14
14
A
380 387Right-handed alpha
Helix 15
15
B
129 131Right-handed 310
Helix 16
16
B
166 173Right-handed alpha
Helix 17
17
B
176 188Right-handed alpha
Helix 18
18
B
217 226Right-handed alpha
Helix 19
19
B
229 249Right-handed alpha
Helix 20
20
B
258 260Right-handed 310
Helix 21
21
B
294 296Right-handed 310
Helix 22
22
B
297 302Right-handed alpha
Helix 23
23
B
309 325Right-handed alpha
Helix 24
24
B
333 343Right-handed alpha
Helix 25
25
B
353 364Right-handed alpha
Helix 26
26
B
367 371Right-handed 310
Helix 27
27
B
373 380Right-handed alpha
Helix 28
28
B
380 387Right-handed alpha
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There are 6 sheets in PDB entry 2J4Z. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 141first strand
Strand 2
A
145 152anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
205 211anti-parallel
Strand 5
A
196 201anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
270 272anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
291 292anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 141first strand
Strand 2
B
145 152anti-parallel
Strand 3
B
158 165anti-parallel
Strand 4
B
205 210anti-parallel
Strand 5
B
196 201anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
270 272anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 288first strand
Strand 2
B
291 292anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il