Analysis of interatomic Contacts of Structural Units in PDB entry:
2J58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2J58 entry

There are 8 chains in PDB entry 2J58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 22	ARG 376
B	THR 22	ARG 376
C	THR 22	ARG 376
D	THR 22	ARG 376
E	THR 22	ARG 376
F	THR 22	ARG 376
G	THR 22	ARG 376
H	THR 22	ARG 376

There are112 helices in PDB entry 2J58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	45	48	Right-handed 310
Helix 2	2	A	56	64	Right-handed alpha
Helix 3	3	A	73	82	Right-handed alpha
Helix 4	4	A	100	105	Right-handed alpha
Helix 5	5	A	112	117	Right-handed alpha
Helix 6	6	A	140	153	Right-handed alpha
Helix 7	7	A	193	201	Right-handed alpha
Helix 8	8	A	225	231	Right-handed alpha
Helix 9	9	A	235	238	Right-handed 310
Helix 10	10	A	252	254	Right-handed 310
Helix 11	11	A	277	285	Right-handed alpha
Helix 12	12	A	325	330	Right-handed alpha
Helix 13	13	A	345	355	Right-handed alpha
Helix 14	14	A	357	375	Right-handed alpha
Helix 15	15	B	45	48	Right-handed 310
Helix 16	16	B	56	64	Right-handed alpha
Helix 17	17	B	73	82	Right-handed alpha
Helix 18	18	B	100	105	Right-handed alpha
Helix 19	19	B	112	117	Right-handed alpha
Helix 20	20	B	140	153	Right-handed alpha
Helix 21	21	B	193	201	Right-handed alpha
Helix 22	22	B	225	231	Right-handed alpha
Helix 23	23	B	235	238	Right-handed 310
Helix 24	24	B	252	254	Right-handed 310
Helix 25	25	B	277	285	Right-handed alpha
Helix 26	26	B	325	330	Right-handed alpha
Helix 27	27	B	345	355	Right-handed alpha
Helix 28	28	B	357	375	Right-handed alpha
Helix 29	29	C	45	48	Right-handed 310
Helix 30	30	C	56	64	Right-handed alpha
Helix 31	31	C	73	82	Right-handed alpha
Helix 32	32	C	100	105	Right-handed alpha
Helix 33	33	C	112	117	Right-handed alpha
Helix 34	34	C	140	153	Right-handed alpha
Helix 35	35	C	193	201	Right-handed alpha
Helix 36	36	C	225	231	Right-handed alpha
Helix 37	37	C	235	238	Right-handed 310
Helix 38	38	C	252	254	Right-handed 310
Helix 39	39	C	277	285	Right-handed alpha
Helix 40	40	C	325	330	Right-handed alpha
Helix 41	41	C	345	355	Right-handed alpha
Helix 42	42	C	357	376	Right-handed alpha
Helix 43	43	D	45	48	Right-handed 310
Helix 44	44	D	56	64	Right-handed alpha
Helix 45	45	D	73	82	Right-handed alpha
Helix 46	46	D	100	105	Right-handed alpha
Helix 47	47	D	112	117	Right-handed alpha
Helix 48	48	D	140	153	Right-handed alpha
Helix 49	49	D	193	201	Right-handed alpha
Helix 50	50	D	225	231	Right-handed alpha
Helix 51	51	D	235	238	Right-handed 310
Helix 52	52	D	252	254	Right-handed 310
Helix 53	53	D	277	285	Right-handed alpha
Helix 54	54	D	325	330	Right-handed alpha
Helix 55	55	D	345	355	Right-handed alpha
Helix 56	56	D	357	375	Right-handed alpha
Helix 57	57	E	45	48	Right-handed 310
Helix 58	58	E	56	64	Right-handed alpha
Helix 59	59	E	73	82	Right-handed alpha
Helix 60	60	E	100	105	Right-handed alpha
Helix 61	61	E	112	117	Right-handed alpha
Helix 62	62	E	140	153	Right-handed alpha
Helix 63	63	E	193	201	Right-handed alpha
Helix 64	64	E	225	231	Right-handed alpha
Helix 65	65	E	235	238	Right-handed 310
Helix 66	66	E	252	254	Right-handed 310
Helix 67	67	E	277	285	Right-handed alpha
Helix 68	68	E	325	330	Right-handed alpha
Helix 69	69	E	345	355	Right-handed alpha
Helix 70	70	E	357	376	Right-handed alpha
Helix 71	71	F	45	48	Right-handed 310
Helix 72	72	F	56	64	Right-handed alpha
Helix 73	73	F	73	82	Right-handed alpha
Helix 74	74	F	100	105	Right-handed alpha
Helix 75	75	F	112	117	Right-handed alpha
Helix 76	76	F	140	153	Right-handed alpha
Helix 77	77	F	193	201	Right-handed alpha
Helix 78	78	F	225	231	Right-handed alpha
Helix 79	79	F	235	238	Right-handed 310
Helix 80	80	F	252	254	Right-handed 310
Helix 81	81	F	277	285	Right-handed alpha
Helix 82	82	F	325	330	Right-handed alpha
Helix 83	83	F	345	355	Right-handed alpha
Helix 84	84	F	357	376	Right-handed alpha
Helix 85	85	G	45	48	Right-handed 310
Helix 86	86	G	56	64	Right-handed alpha
Helix 87	87	G	73	82	Right-handed alpha
Helix 88	88	G	100	105	Right-handed alpha
Helix 89	89	G	112	117	Right-handed alpha
Helix 90	90	G	140	153	Right-handed alpha
Helix 91	91	G	193	201	Right-handed alpha
Helix 92	92	G	225	231	Right-handed alpha
Helix 93	93	G	235	238	Right-handed 310
Helix 94	94	G	252	254	Right-handed 310
Helix 95	95	G	277	285	Right-handed alpha
Helix 96	96	G	325	330	Right-handed alpha
Helix 97	97	G	345	355	Right-handed alpha
Helix 98	98	G	357	375	Right-handed alpha
Helix 99	99	H	45	48	Right-handed 310
Helix 100	100	H	56	64	Right-handed alpha
Helix 101	101	H	73	82	Right-handed alpha
Helix 102	102	H	100	105	Right-handed alpha
Helix 103	103	H	112	117	Right-handed alpha
Helix 104	104	H	140	153	Right-handed alpha
Helix 105	105	H	193	201	Right-handed alpha
Helix 106	106	H	225	231	Right-handed alpha
Helix 107	107	H	235	238	Right-handed 310
Helix 108	108	H	252	254	Right-handed 310
Helix 109	109	H	277	285	Right-handed alpha
Helix 110	110	H	325	330	Right-handed alpha
Helix 111	111	H	345	355	Right-handed alpha
Helix 112	112	H	357	376	Right-handed alpha

There are 32 sheets in PDB entry 2J58. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, CA, CB, CC, CD, CE, A, DB, C, DD, EA, EB, EC, ED, FA, FB, FC, GA, GB, GC, GD, HA, HB, HC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	D	50	54	parallel
Strand 3	D	313	318	parallel
Strand 4	D	293	303	anti-parallel
Strand 5	D	338	344	anti-parallel
Strand 6	D	256	261	parallel
Strand 7	D	267	270	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	270	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	338	344	parallel
Strand 4	A	293	303	anti-parallel
Strand 5	A	313	318	anti-parallel
Strand 6	A	50	54	parallel
Strand 7	B	35	36	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	161	167	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	132	135	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	172	177	anti-parallel
Strand 3	A	246	249	parallel
Strand 4	A	213	217	anti-parallel
Strand 5	A	220	224	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	270	first strand
Strand 2	B	256	261	anti-parallel
Strand 3	B	338	344	parallel
Strand 4	B	293	303	anti-parallel
Strand 5	B	313	318	anti-parallel
Strand 6	B	50	54	parallel
Strand 7	G	35	36	parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	161	167	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	132	135	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	186	first strand
Strand 2	B	172	177	anti-parallel
Strand 3	B	246	249	parallel
Strand 4	B	213	217	anti-parallel
Strand 5	B	220	224	anti-parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	H	50	54	parallel
Strand 3	H	313	318	parallel
Strand 4	H	293	303	anti-parallel
Strand 5	H	338	344	anti-parallel
Strand 6	H	256	261	parallel
Strand 7	H	267	270	anti-parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	270	first strand
Strand 2	C	256	261	anti-parallel
Strand 3	C	338	344	parallel
Strand 4	C	293	303	anti-parallel
Strand 5	C	313	318	anti-parallel
Strand 6	C	50	54	parallel
Strand 7	F	35	36	parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	161	167	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	128	first strand
Strand 2	C	132	135	anti-parallel

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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	172	177	anti-parallel
Strand 3	C	246	249	parallel
Strand 4	C	213	217	anti-parallel
Strand 5	C	220	224	anti-parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	E	50	54	parallel
Strand 3	E	313	318	parallel
Strand 4	E	293	303	anti-parallel
Strand 5	E	338	344	anti-parallel
Strand 6	E	256	261	parallel
Strand 7	E	267	270	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	92	97	anti-parallel
Strand 3	D	161	167	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	128	first strand
Strand 2	D	132	135	anti-parallel

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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	186	first strand
Strand 2	D	172	177	anti-parallel
Strand 3	D	246	249	parallel
Strand 4	D	213	217	anti-parallel
Strand 5	D	220	224	anti-parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	F	50	54	parallel
Strand 3	F	313	318	parallel
Strand 4	F	293	303	anti-parallel
Strand 5	F	338	344	anti-parallel
Strand 6	F	256	261	parallel
Strand 7	F	267	270	anti-parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	E	92	97	anti-parallel
Strand 3	E	161	167	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	128	first strand
Strand 2	E	132	135	anti-parallel

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There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	186	first strand
Strand 2	E	172	177	anti-parallel
Strand 3	E	246	249	parallel
Strand 4	E	213	217	anti-parallel
Strand 5	E	220	224	anti-parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	F	92	97	anti-parallel
Strand 3	F	161	167	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	128	first strand
Strand 2	F	132	135	anti-parallel

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There are 5 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	186	first strand
Strand 2	F	172	177	anti-parallel
Strand 3	F	246	249	parallel
Strand 4	F	213	217	anti-parallel
Strand 5	F	220	224	anti-parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	267	270	first strand
Strand 2	G	256	261	anti-parallel
Strand 3	G	338	344	parallel
Strand 4	G	293	303	anti-parallel
Strand 5	G	313	318	anti-parallel
Strand 6	G	50	54	parallel
Strand 7	H	35	36	parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	119	first strand
Strand 2	G	92	97	anti-parallel
Strand 3	G	161	167	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	128	first strand
Strand 2	G	132	135	anti-parallel

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There are 5 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	186	first strand
Strand 2	G	172	177	anti-parallel
Strand 3	G	246	249	parallel
Strand 4	G	213	217	anti-parallel
Strand 5	G	220	224	anti-parallel

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There are 3 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	119	first strand
Strand 2	H	92	97	anti-parallel
Strand 3	H	161	167	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	128	first strand
Strand 2	H	132	135	anti-parallel

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There are 5 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	183	186	first strand
Strand 2	H	172	177	anti-parallel
Strand 3	H	246	249	parallel
Strand 4	H	213	217	anti-parallel
Strand 5	H	220	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2J58

Analysis of interatomic Contacts of Structural Units in PDB entry:
2J58