Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2J6O entry
There are 2 chains in PDB entry 2J6O
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
VAL 2 | LYS 58 |
C
|
PRO 327 | VAL 333 |
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There is 1
helix in PDB entry 2J6O. Click on helix number for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 51 |
53 | Right-handed 310 |
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There is
1 sheet ( AA) in PDB entry 2J6O.
There are 5
strands in AA sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 45 |
50 | first strand |
Strand 2 |
A
| 37 |
42 | anti-parallel |
Strand 3 |
A
| 25 |
31 | anti-parallel |
Strand 4 |
A
| 4 |
6 | anti-parallel |
Strand 5 |
A
| 54 |
56 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il