Analysis of interatomic Contacts of Structural Units in PDB entry:
2J6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J6U entry

There are 4 chains in PDB entry 2J6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 1GLU 345
P
G 1 DT 14
T
C 2 C 4
T
G 6 C 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2J6U. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
13 22Right-handed alpha
Helix 2
2
A
23 27Right-handed 310
Helix 3
3
A
50 55Right-handed alpha
Helix 4
4
A
63 71Right-handed alpha
Helix 5
5
A
80 97Right-handed alpha
Helix 6
6
A
119 140Right-handed alpha
Helix 7
7
A
150 162Right-handed alpha
Helix 8
8
A
170 181Right-handed alpha
Helix 9
9
A
183 186Right-handed 310
Helix 10
10
A
190 201Right-handed alpha
Helix 11
11
A
205 211Right-handed 310
Helix 12
12
A
212 221Right-handed alpha
Helix 13
13
A
221 233Right-handed alpha
Helix 14
14
A
260 280Right-handed alpha
Helix 15
15
A
310 329Right-handed alpha
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There are 3 sheets in PDB entry 2J6U. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
102 106first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
6 11anti-parallel
Strand 4
A
143 148anti-parallel
Strand 5
A
166 168parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 49first strand
Strand 2
A
31 36anti-parallel
Strand 3
A
75 78parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
247 258first strand
Strand 2
A
333 343anti-parallel
Strand 3
A
284 293anti-parallel
Strand 4
A
298 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il