Analysis of interatomic Contacts of Structural Units in PDB entry:
2J78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J78 entry

There are 2 chains in PDB entry 2J78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3ASP 446
B
 SER 1LEU 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2J78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 22Right-handed alpha
Helix 2
2
A
26 30Right-handed 310
Helix 3
3
A
33 40Right-handed alpha
Helix 4
4
A
45 49Right-handed 310
Helix 5
5
A
56 71Right-handed alpha
Helix 6
6
A
81 86Right-handed alpha
Helix 7
7
A
94 111Right-handed alpha
Helix 8
8
A
125 130Right-handed alpha
Helix 9
9
A
131 137Right-handed 310
Helix 10
10
A
138 155Right-handed alpha
Helix 11
11
A
166 176Right-handed alpha
Helix 12
12
A
186 212Right-handed alpha
Helix 13
13
A
232 247Right-handed alpha
Helix 14
14
A
248 258Right-handed alpha
Helix 15
15
A
261 269Right-handed alpha
Helix 16
16
A
270 272Right-handed 310
Helix 17
17
A
275 278Right-handed 310
Helix 18
18
A
279 284Right-handed alpha
Helix 19
19
A
328 343Right-handed alpha
Helix 20
20
A
368 388Right-handed alpha
Helix 21
21
A
405 412Right-handed 310
Helix 22
22
A
429 442Right-handed alpha
Helix 23
23
B
17 22Right-handed alpha
Helix 24
24
B
26 30Right-handed 310
Helix 25
25
B
33 40Right-handed alpha
Helix 26
26
B
45 49Right-handed 310
Helix 27
27
B
56 71Right-handed alpha
Helix 28
28
B
81 86Right-handed alpha
Helix 29
29
B
94 111Right-handed alpha
Helix 30
30
B
125 130Right-handed alpha
Helix 31
31
B
131 137Right-handed 310
Helix 32
32
B
138 155Right-handed alpha
Helix 33
33
B
166 176Right-handed alpha
Helix 34
34
B
186 212Right-handed alpha
Helix 35
35
B
232 247Right-handed alpha
Helix 36
36
B
248 258Right-handed alpha
Helix 37
37
B
261 269Right-handed alpha
Helix 38
38
B
270 272Right-handed 310
Helix 39
39
B
275 278Right-handed 310
Helix 40
40
B
279 284Right-handed alpha
Helix 41
41
B
328 343Right-handed alpha
Helix 42
42
B
368 388Right-handed alpha
Helix 43
43
B
405 412Right-handed 310
Helix 44
44
B
429 442Right-handed alpha
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There are 6 sheets in PDB entry 2J78. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
443 444anti-parallel
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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
392 398parallel
Strand 3
A
347 352parallel
Strand 4
A
289 302parallel
Strand 5
A
216 228parallel
Strand 6
A
160 165parallel
Strand 7
A
114 120parallel
Strand 8
A
75 79parallel
Strand 9
A
11 15parallel
Strand 10
A
11 15first strand
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 419first strand
Strand 2
A
426 428anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
443 444anti-parallel
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There are 10 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
392 398parallel
Strand 3
B
347 352parallel
Strand 4
B
289 302parallel
Strand 5
B
216 228parallel
Strand 6
B
160 165parallel
Strand 7
B
114 120parallel
Strand 8
B
75 79parallel
Strand 9
B
11 15parallel
Strand 10
B
11 15first strand
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 420first strand
Strand 2
B
425 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il