Analysis of interatomic Contacts of Structural Units in PDB entry:
2J8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J8D entry

There are 3 chains in PDB entry 2J8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 MET 1ALA 260
L
 ALA 1GLY 281
M
 ALA 1ASN 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 2J8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
10 35Right-handed alpha
Helix 2
2
H
103 108Right-handed alpha
Helix 3
3
H
109 113Right-handed 310
Helix 4
4
H
135 137Right-handed 310
Helix 5
5
H
194 196Right-handed 310
Helix 6
6
H
209 213Right-handed 310
Helix 7
7
H
226 244Right-handed alpha
Helix 8
8
H
244 250Right-handed alpha
Helix 9
9
H
250 255Right-handed alpha
Helix 10
10
L
6 10Right-handed 310
Helix 11
11
L
31 57Right-handed alpha
Helix 12
12
L
70 74Right-handed 310
Helix 13
13
L
79 82Right-handed 310
Helix 14
14
L
83 112Right-handed alpha
Helix 15
15
L
115 133Right-handed alpha
Helix 16
16
L
133 140Right-handed alpha
Helix 17
17
L
141 145Right-handed 310
Helix 18
18
L
151 163Right-handed alpha
Helix 19
19
L
166 169Right-handed 310
Helix 20
20
L
170 199Right-handed alpha
Helix 21
21
L
208 221Right-handed alpha
Helix 22
22
L
224 250Right-handed alpha
Helix 23
23
L
258 263Right-handed alpha
Helix 24
24
L
263 268Right-handed alpha
Helix 25
25
L
269 274Right-handed alpha
Helix 26
26
M
25 28Right-handed 310
Helix 27
27
M
38 42Right-handed 310
Helix 28
28
M
52 78Right-handed alpha
Helix 29
29
M
81 88Right-handed alpha
Helix 30
30
M
98 102Right-handed 310
Helix 31
31
M
108 111Right-handed 310
Helix 32
32
M
112 140Right-handed alpha
Helix 33
33
M
144 162Right-handed alpha
Helix 34
34
M
162 169Right-handed alpha
Helix 35
35
M
170 174Right-handed 310
Helix 36
36
M
178 193Right-handed alpha
Helix 37
37
M
195 198Right-handed 310
Helix 38
38
M
199 226Right-handed alpha
Helix 39
39
M
227 230Right-handed 310
Helix 40
40
M
233 240Right-handed alpha
Helix 41
41
M
242 257Right-handed alpha
Helix 42
42
M
261 287Right-handed alpha
Helix 43
43
M
293 301Right-handed alpha
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There are 7 sheets in PDB entry 2J8D. Click on sheet of interest to get list of strands forming it: HA, HB, HC, HD, HE, LA, LB,

There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
62 66first strand
Strand 2
H
71 75anti-parallel
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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
87 89first strand
Strand 2
H
98 100anti-parallel
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There are 5 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 133first strand
Strand 2
H
160 170anti-parallel
Strand 3
H
152 154anti-parallel
Strand 4
H
203 204parallel
Strand 5
H
197 198anti-parallel
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There are 4 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 133first strand
Strand 2
H
160 170anti-parallel
Strand 3
H
175 183anti-parallel
Strand 4
H
188 192anti-parallel
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There are 2 strands in HE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
141 144first strand
Strand 2
M
11 13anti-parallel
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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
25 26first strand
Strand 2
L
29 30anti-parallel
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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
65 66first strand
Strand 2
L
148 149anti-parallel
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