Analysis of interatomic Contacts of Structural Units in PDB entry:
2J9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J9F entry

There are 4 chains in PDB entry 2J9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6LYS 400
B
 GLU 14GLY 343
C
 LYS 6LYS 400
D
 GLU 14GLY 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 2J9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 49Right-handed 310
Helix 2
2
A
53 80Right-handed alpha
Helix 3
3
A
92 102Right-handed alpha
Helix 4
4
A
115 122Right-handed alpha
Helix 5
5
A
125 135Right-handed alpha
Helix 6
6
A
166 181Right-handed alpha
Helix 7
7
A
194 197Right-handed 310
Helix 8
8
A
198 211Right-handed alpha
Helix 9
9
A
231 233Right-handed 310
Helix 10
10
A
239 243Right-handed 310
Helix 11
11
A
243 247Right-handed 310
Helix 12
12
A
257 276Right-handed alpha
Helix 13
13
A
296 300Right-handed 310
Helix 14
14
A
314 327Right-handed alpha
Helix 15
15
A
330 355Right-handed alpha
Helix 16
16
A
359 364Right-handed 310
Helix 17
17
A
372 390Right-handed alpha
Helix 18
18
A
391 393Right-handed 310
Helix 19
19
A
394 397Right-handed 310
Helix 20
20
B
22 38Right-handed alpha
Helix 21
21
B
59 65Right-handed alpha
Helix 22
22
B
75 89Right-handed alpha
Helix 23
23
B
99 103Right-handed 310
Helix 24
24
B
103 105Right-handed 310
Helix 25
25
B
106 112Right-handed alpha
Helix 26
26
B
116 121Right-handed alpha
Helix 27
27
B
142 146Right-handed 310
Helix 28
28
B
150 156Right-handed alpha
Helix 29
29
B
167 181Right-handed alpha
Helix 30
30
B
192 194Right-handed 310
Helix 31
31
B
229 246Right-handed alpha
Helix 32
32
B
261 273Right-handed alpha
Helix 33
33
B
286 300Right-handed alpha
Helix 34
34
B
321 326Right-handed alpha
Helix 35
35
B
328 342Right-handed alpha
Helix 36
36
C
45 49Right-handed 310
Helix 37
37
C
53 80Right-handed alpha
Helix 38
38
C
92 102Right-handed alpha
Helix 39
39
C
115 122Right-handed alpha
Helix 40
40
C
125 135Right-handed alpha
Helix 41
41
C
166 181Right-handed alpha
Helix 42
42
C
194 197Right-handed 310
Helix 43
43
C
198 211Right-handed alpha
Helix 44
44
C
230 234Right-handed alpha
Helix 45
45
C
239 243Right-handed 310
Helix 46
46
C
243 247Right-handed 310
Helix 47
47
C
257 276Right-handed alpha
Helix 48
48
C
296 300Right-handed 310
Helix 49
49
C
314 327Right-handed alpha
Helix 50
50
C
330 355Right-handed alpha
Helix 51
51
C
359 364Right-handed 310
Helix 52
52
C
372 390Right-handed alpha
Helix 53
53
C
391 393Right-handed 310
Helix 54
54
C
394 397Right-handed 310
Helix 55
55
D
22 38Right-handed alpha
Helix 56
56
D
59 65Right-handed alpha
Helix 57
57
D
75 89Right-handed alpha
Helix 58
58
D
99 103Right-handed 310
Helix 59
59
D
103 105Right-handed 310
Helix 60
60
D
106 112Right-handed alpha
Helix 61
61
D
113 115Right-handed 310
Helix 62
62
D
116 121Right-handed alpha
Helix 63
63
D
142 146Right-handed 310
Helix 64
64
D
150 156Right-handed alpha
Helix 65
65
D
167 181Right-handed alpha
Helix 66
66
D
192 194Right-handed 310
Helix 67
67
D
229 246Right-handed alpha
Helix 68
68
D
261 273Right-handed alpha
Helix 69
69
D
286 299Right-handed alpha
Helix 70
70
D
321 326Right-handed alpha
Helix 71
71
D
328 341Right-handed alpha
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There are 11 sheets in PDB entry 2J9F. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, A, DB, C,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
C
33 34parallel
Strand 3
C
249 254parallel
Strand 4
C
279 284parallel
Strand 5
C
215 221parallel
Strand 6
C
187 192parallel
Strand 7
C
108 110parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
C
16 17parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
187 192parallel
Strand 3
A
215 221parallel
Strand 4
A
279 284parallel
Strand 5
A
249 254parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
228 229anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
199 202anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
42 45parallel
Strand 3
B
93 96parallel
Strand 4
B
130 136parallel
Strand 5
B
185 190parallel
Strand 6
B
161 163parallel
Strand 7
B
256 258anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 217first strand
Strand 2
B
249 253anti-parallel
Strand 3
B
222 226parallel
Strand 4
B
275 282parallel
Strand 5
B
308 312parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 225first strand
Strand 2
C
228 229anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 21first strand
Strand 2
D
199 202anti-parallel
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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 71first strand
Strand 2
D
42 45parallel
Strand 3
D
93 96parallel
Strand 4
D
130 136parallel
Strand 5
D
185 190parallel
Strand 6
D
161 163parallel
Strand 7
D
256 258anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 217first strand
Strand 2
D
249 253anti-parallel
Strand 3
D
222 226parallel
Strand 4
D
275 282parallel
Strand 5
D
308 312parallel
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