Analysis of interatomic Contacts of Structural Units in PDB entry:
2JB3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JB3 entry

There are 2 chains in PDB entry 2JB3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4GLU 489
B
 ASP 4GLN 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2JB3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 34Right-handed alpha
Helix 2
2
A
89 99Right-handed alpha
Helix 3
3
A
129 151Right-handed alpha
Helix 4
4
A
158 173Right-handed alpha
Helix 5
5
A
184 187Right-handed 310
Helix 6
6
A
207 215Right-handed alpha
Helix 7
7
A
219 225Right-handed 310
Helix 8
8
A
240 251Right-handed alpha
Helix 9
9
A
294 299Right-handed alpha
Helix 10
10
A
306 315Right-handed alpha
Helix 11
11
A
331 336Right-handed alpha
Helix 12
12
A
374 382Right-handed alpha
Helix 13
13
A
384 401Right-handed alpha
Helix 14
14
A
402 406Right-handed 310
Helix 15
15
A
417 419Right-handed 310
Helix 16
16
A
441 448Right-handed alpha
Helix 17
17
A
458 461Right-handed 310
Helix 18
18
A
467 488Right-handed alpha
Helix 19
19
B
21 34Right-handed alpha
Helix 20
20
B
89 99Right-handed alpha
Helix 21
21
B
129 150Right-handed alpha
Helix 22
22
B
158 174Right-handed alpha
Helix 23
23
B
184 187Right-handed 310
Helix 24
24
B
207 215Right-handed alpha
Helix 25
25
B
219 225Right-handed 310
Helix 26
26
B
240 251Right-handed alpha
Helix 27
27
B
294 299Right-handed alpha
Helix 28
28
B
306 314Right-handed alpha
Helix 29
29
B
331 336Right-handed alpha
Helix 30
30
B
374 382Right-handed alpha
Helix 31
31
B
384 390Right-handed alpha
Helix 32
32
B
392 401Right-handed alpha
Helix 33
33
B
402 406Right-handed 310
Helix 34
34
B
417 419Right-handed 310
Helix 35
35
B
441 447Right-handed alpha
Helix 36
36
B
458 461Right-handed 310
Helix 37
37
B
467 488Right-handed alpha
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There are 18 sheets in PDB entry 2JB3. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG, BH, BI,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
37 41parallel
Strand 3
A
14 18parallel
Strand 4
A
288 291parallel
Strand 5
A
454 456parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
77 79anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
67 69anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
102 105anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
113 115anti-parallel
Strand 3
A
343 346parallel
Strand 4
A
352 354anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
201 202anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 286first strand
Strand 2
A
270 277anti-parallel
Strand 3
A
260 267anti-parallel
Strand 4
A
302 303parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
428 429anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 373first strand
Strand 2
A
321 328anti-parallel
Strand 3
A
408 415anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
37 41parallel
Strand 3
B
14 18parallel
Strand 4
B
288 291parallel
Strand 5
B
454 456parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
77 79anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
67 69anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
232 235anti-parallel
Strand 3
B
102 105anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
113 115anti-parallel
Strand 3
B
343 346parallel
Strand 4
B
352 354anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 191first strand
Strand 2
B
201 202anti-parallel
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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 286first strand
Strand 2
B
270 277anti-parallel
Strand 3
B
259 267anti-parallel
Strand 4
B
302 303parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 317first strand
Strand 2
B
428 429anti-parallel
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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 373first strand
Strand 2
B
321 328anti-parallel
Strand 3
B
408 415anti-parallel
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