Analysis of interatomic Contacts of Structural Units in PDB entry:
2JBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JBO entry

There is 1 chain in PDB entry 2JBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 44GLU 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 2JBO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
58 61Right-handed 310
Helix 2
2
A
98 112Right-handed alpha
Helix 3
3
A
145 152Right-handed alpha
Helix 4
4
A
160 180Right-handed alpha
Helix 5
5
A
188 190Right-handed 310
Helix 6
6
A
242 259Right-handed alpha
Helix 7
7
A
273 281Right-handed alpha
Helix 8
8
A
290 294Right-handed 310
Helix 9
9
A
295 306Right-handed alpha
Helix 10
10
A
309 313Right-handed 310
Helix 11
11
A
315 322Right-handed alpha
Helix 12
12
A
322 327Right-handed alpha
Helix 13
13
A
337 343Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2JBO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
54 55first strand
Strand 2
A
120 128parallel
Strand 3
A
131 138anti-parallel
Strand 4
A
89 96anti-parallel
Strand 5
A
76 83anti-parallel
Strand 6
A
63 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
158 159first strand
Strand 2
A
335 336anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
182 183first strand
Strand 2
A
212 213anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
192 194first strand
Strand 2
A
203 205anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il