Analysis of interatomic Contacts of Structural Units in PDB entry:
2JD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JD5 entry

There are 3 chains in PDB entry 2JD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 144ASP 738
B
 PRO 146ARG 737
C
 ARG 654PRO 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2JD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
192 213Right-handed alpha
Helix 2
2
A
215 223Right-handed alpha
Helix 3
3
A
253 260Right-handed alpha
Helix 4
4
A
266 287Right-handed alpha
Helix 5
5
A
296 298Right-handed 310
Helix 6
6
A
539 542Right-handed 310
Helix 7
7
A
572 578Right-handed alpha
Helix 8
8
A
583 600Right-handed alpha
Helix 9
9
A
615 627Right-handed alpha
Helix 10
10
A
630 637Right-handed alpha
Helix 11
11
A
639 644Right-handed alpha
Helix 12
12
A
660 668Right-handed alpha
Helix 13
13
A
672 684Right-handed alpha
Helix 14
14
A
685 688Right-handed 310
Helix 15
15
A
696 702Right-handed alpha
Helix 16
16
A
703 707Right-handed 310
Helix 17
17
B
192 212Right-handed alpha
Helix 18
18
B
215 223Right-handed alpha
Helix 19
19
B
252 260Right-handed alpha
Helix 20
20
B
266 286Right-handed alpha
Helix 21
21
B
296 298Right-handed 310
Helix 22
22
B
539 542Right-handed 310
Helix 23
23
B
567 571Right-handed 310
Helix 24
24
B
572 577Right-handed alpha
Helix 25
25
B
583 600Right-handed alpha
Helix 26
26
B
613 627Right-handed alpha
Helix 27
27
B
630 637Right-handed alpha
Helix 28
28
B
639 644Right-handed alpha
Helix 29
29
B
660 668Right-handed alpha
Helix 30
30
B
672 684Right-handed alpha
Helix 31
31
B
696 701Right-handed alpha
Helix 32
32
B
702 707Right-handed 310
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There are 6 sheets in PDB entry 2JD5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
158 166anti-parallel
Strand 3
A
170 177anti-parallel
Strand 4
A
182 189anti-parallel
Strand 5
A
239 246anti-parallel
Strand 6
A
230 236anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
300 306anti-parallel
Strand 3
A
543 548anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
555 556anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
158 163anti-parallel
Strand 3
B
172 177anti-parallel
Strand 4
B
182 188anti-parallel
Strand 5
B
239 246anti-parallel
Strand 6
B
228 236anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
555 556anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 306first strand
Strand 2
B
543 548anti-parallel
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