Analysis of interatomic Contacts of Structural Units in PDB entry:
2JD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JD7 entry

There are 36 chains in PDB entry 2JD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 MET 1GLY 167
1
 MET 1GLY 167
2
 MET 1GLY 167
3
 MET 1GLY 167
4
 MET 1GLY 167
5
 MET 1GLY 167
6
 MET 1GLY 167
7
 MET 1GLY 167
8
 MET 1GLY 167
9
 MET 1GLY 167
A
 MET 1GLY 167
B
 MET 1GLY 167
C
 MET 1GLY 167
D
 MET 1GLY 167
E
 MET 1GLY 167
F
 MET 1GLY 167
G
 MET 1GLY 167
H
 MET 1GLY 167
I
 MET 1GLY 167
J
 MET 1GLY 167
K
 MET 1GLY 167
L
 MET 1GLY 167
M
 MET 1GLY 167
N
 MET 1GLY 167
O
 MET 1GLY 167
P
 MET 1GLY 167
Q
 MET 1GLY 167
R
 MET 1GLY 167
S
 MET 1GLY 167
T
 MET 1GLY 167
U
 MET 1GLY 167
V
 MET 1GLY 167
W
 MET 1GLY 167
X
 MET 1GLY 167
Y
 MET 1GLY 167
Z
 MET 1GLY 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are184 helices in PDB entry 2JD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
0
3 34Right-handed alpha
Helix 2
2
0
36 64Right-handed alpha
Helix 3
3
0
82 111Right-handed alpha
Helix 4
4
0
113 144Right-handed alpha
Helix 5
5
0
147 159Right-handed alpha
Helix 6
6
1
3 34Right-handed alpha
Helix 7
7
1
36 64Right-handed alpha
Helix 8
8
1
82 112Right-handed alpha
Helix 9
9
1
113 144Right-handed alpha
Helix 10
10
1
147 159Right-handed alpha
Helix 11
11
2
3 35Right-handed alpha
Helix 12
12
2
36 64Right-handed alpha
Helix 13
13
2
82 111Right-handed alpha
Helix 14
14
2
113 145Right-handed alpha
Helix 15
15
2
147 159Right-handed alpha
Helix 16
16
3
3 35Right-handed alpha
Helix 17
17
3
36 64Right-handed alpha
Helix 18
18
3
82 111Right-handed alpha
Helix 19
19
3
113 120Right-handed alpha
Helix 20
20
3
120 144Right-handed alpha
Helix 21
21
3
147 159Right-handed alpha
Helix 22
22
4
3 34Right-handed alpha
Helix 23
23
4
36 64Right-handed alpha
Helix 24
24
4
82 110Right-handed alpha
Helix 25
25
4
113 144Right-handed alpha
Helix 26
26
4
147 159Right-handed alpha
Helix 27
27
5
3 35Right-handed alpha
Helix 28
28
5
36 64Right-handed alpha
Helix 29
29
5
82 111Right-handed alpha
Helix 30
30
5
113 143Right-handed alpha
Helix 31
31
5
147 159Right-handed alpha
Helix 32
32
6
3 34Right-handed alpha
Helix 33
33
6
36 64Right-handed alpha
Helix 34
34
6
82 111Right-handed alpha
Helix 35
35
6
113 143Right-handed alpha
Helix 36
36
6
147 159Right-handed alpha
Helix 37
37
7
3 35Right-handed alpha
Helix 38
38
7
36 64Right-handed alpha
Helix 39
39
7
82 112Right-handed alpha
Helix 40
40
7
113 144Right-handed alpha
Helix 41
41
7
147 159Right-handed alpha
Helix 42
42
8
3 34Right-handed alpha
Helix 43
43
8
36 64Right-handed alpha
Helix 44
44
8
82 111Right-handed alpha
Helix 45
45
8
113 144Right-handed alpha
Helix 46
46
8
147 160Right-handed alpha
Helix 47
47
9
3 35Right-handed alpha
Helix 48
48
9
36 64Right-handed alpha
Helix 49
49
9
82 112Right-handed alpha
Helix 50
50
9
113 143Right-handed alpha
Helix 51
51
9
147 159Right-handed alpha
Helix 52
52
A
3 34Right-handed alpha
Helix 53
53
A
36 64Right-handed alpha
Helix 54
54
A
82 111Right-handed alpha
Helix 55
55
A
113 120Right-handed alpha
Helix 56
56
A
120 144Right-handed alpha
Helix 57
57
A
147 159Right-handed alpha
Helix 58
58
B
3 34Right-handed alpha
Helix 59
59
B
36 64Right-handed alpha
Helix 60
60
B
82 111Right-handed alpha
Helix 61
61
B
113 144Right-handed alpha
Helix 62
62
B
147 159Right-handed alpha
Helix 63
63
C
3 34Right-handed alpha
Helix 64
64
C
36 64Right-handed alpha
Helix 65
65
C
82 112Right-handed alpha
Helix 66
66
C
113 144Right-handed alpha
Helix 67
67
C
147 159Right-handed alpha
Helix 68
68
D
3 35Right-handed alpha
Helix 69
69
D
36 64Right-handed alpha
Helix 70
70
D
82 111Right-handed alpha
Helix 71
71
D
113 145Right-handed alpha
Helix 72
72
D
147 160Right-handed alpha
Helix 73
73
E
3 34Right-handed alpha
Helix 74
74
E
36 64Right-handed alpha
Helix 75
75
E
82 111Right-handed alpha
Helix 76
76
E
113 144Right-handed alpha
Helix 77
77
E
147 159Right-handed alpha
Helix 78
78
F
3 35Right-handed alpha
Helix 79
79
F
36 64Right-handed alpha
Helix 80
80
F
82 111Right-handed alpha
Helix 81
81
F
113 144Right-handed alpha
Helix 82
82
F
147 159Right-handed alpha
Helix 83
83
G
3 34Right-handed alpha
Helix 84
84
G
36 64Right-handed alpha
Helix 85
85
G
82 112Right-handed alpha
Helix 86
86
G
113 144Right-handed alpha
Helix 87
87
G
147 159Right-handed alpha
Helix 88
88
H
3 35Right-handed alpha
Helix 89
89
H
36 64Right-handed alpha
Helix 90
90
H
82 111Right-handed alpha
Helix 91
91
H
113 144Right-handed alpha
Helix 92
92
H
147 159Right-handed alpha
Helix 93
93
I
3 34Right-handed alpha
Helix 94
94
I
36 64Right-handed alpha
Helix 95
95
I
82 111Right-handed alpha
Helix 96
96
I
113 144Right-handed alpha
Helix 97
97
I
147 159Right-handed alpha
Helix 98
98
J
3 33Right-handed alpha
Helix 99
99
J
36 64Right-handed alpha
Helix 100
100
J
82 111Right-handed alpha
Helix 101
101
J
113 143Right-handed alpha
Helix 102
102
J
147 159Right-handed alpha
Helix 103
103
K
3 35Right-handed alpha
Helix 104
104
K
36 64Right-handed alpha
Helix 105
105
K
82 112Right-handed alpha
Helix 106
106
K
113 143Right-handed alpha
Helix 107
107
K
147 159Right-handed alpha
Helix 108
108
L
3 34Right-handed alpha
Helix 109
109
L
36 64Right-handed alpha
Helix 110
110
L
82 111Right-handed alpha
Helix 111
111
L
113 143Right-handed alpha
Helix 112
112
L
147 159Right-handed alpha
Helix 113
113
M
3 35Right-handed alpha
Helix 114
114
M
36 64Right-handed alpha
Helix 115
115
M
82 111Right-handed alpha
Helix 116
116
M
113 120Right-handed alpha
Helix 117
117
M
120 144Right-handed alpha
Helix 118
118
M
147 159Right-handed alpha
Helix 119
119
N
3 34Right-handed alpha
Helix 120
120
N
36 64Right-handed alpha
Helix 121
121
N
82 111Right-handed alpha
Helix 122
122
N
113 143Right-handed alpha
Helix 123
123
N
147 159Right-handed alpha
Helix 124
124
O
3 35Right-handed alpha
Helix 125
125
O
36 64Right-handed alpha
Helix 126
126
O
82 111Right-handed alpha
Helix 127
127
O
113 144Right-handed alpha
Helix 128
128
O
147 158Right-handed alpha
Helix 129
129
O
159 161Right-handed 310
Helix 130
130
P
3 35Right-handed alpha
Helix 131
131
P
36 65Right-handed alpha
Helix 132
132
P
82 111Right-handed alpha
Helix 133
133
P
113 145Right-handed alpha
Helix 134
134
P
147 159Right-handed alpha
Helix 135
135
Q
3 35Right-handed alpha
Helix 136
136
Q
36 64Right-handed alpha
Helix 137
137
Q
82 111Right-handed alpha
Helix 138
138
Q
113 144Right-handed alpha
Helix 139
139
Q
147 159Right-handed alpha
Helix 140
140
R
3 35Right-handed alpha
Helix 141
141
R
36 64Right-handed alpha
Helix 142
142
R
82 111Right-handed alpha
Helix 143
143
R
113 144Right-handed alpha
Helix 144
144
R
147 159Right-handed alpha
Helix 145
145
S
3 34Right-handed alpha
Helix 146
146
S
36 64Right-handed alpha
Helix 147
147
S
82 111Right-handed alpha
Helix 148
148
S
113 144Right-handed alpha
Helix 149
149
S
147 159Right-handed alpha
Helix 150
150
T
3 35Right-handed alpha
Helix 151
151
T
36 64Right-handed alpha
Helix 152
152
T
82 111Right-handed alpha
Helix 153
153
T
113 144Right-handed alpha
Helix 154
154
T
147 159Right-handed alpha
Helix 155
155
U
3 35Right-handed alpha
Helix 156
156
U
36 64Right-handed alpha
Helix 157
157
U
82 111Right-handed alpha
Helix 158
158
U
113 144Right-handed alpha
Helix 159
159
U
147 159Right-handed alpha
Helix 160
160
V
3 34Right-handed alpha
Helix 161
161
V
36 64Right-handed alpha
Helix 162
162
V
82 111Right-handed alpha
Helix 163
163
V
113 144Right-handed alpha
Helix 164
164
V
147 159Right-handed alpha
Helix 165
165
W
3 35Right-handed alpha
Helix 166
166
W
36 64Right-handed alpha
Helix 167
167
W
82 111Right-handed alpha
Helix 168
168
W
113 145Right-handed alpha
Helix 169
169
W
147 159Right-handed alpha
Helix 170
170
X
3 35Right-handed alpha
Helix 171
171
X
36 64Right-handed alpha
Helix 172
172
X
82 111Right-handed alpha
Helix 173
173
X
113 143Right-handed alpha
Helix 174
174
X
147 159Right-handed alpha
Helix 175
175
Y
3 34Right-handed alpha
Helix 176
176
Y
36 64Right-handed alpha
Helix 177
177
Y
82 111Right-handed alpha
Helix 178
178
Y
113 145Right-handed alpha
Helix 179
179
Y
147 159Right-handed alpha
Helix 180
180
Z
3 34Right-handed alpha
Helix 181
181
Z
36 64Right-handed alpha
Helix 182
182
Z
82 111Right-handed alpha
Helix 183
183
Z
113 143Right-handed alpha
Helix 184
184
Z
147 159Right-handed alpha
Back to top of page
There are no sheets in PDB entry 2JD7
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il