Analysis of interatomic Contacts of Structural Units in PDB entry:
2JG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2JG3 entry

There are 8 chains in PDB entry 2JG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 23	SER 414
B	G 1	C 10
C	G 11	G 17
C	A 19	C 20
D	THR 23	SER 414
E	G 1	C 10
F	G 11	G 17
F	A 19	C 20

There are 34 helices in PDB entry 2JG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	24	35	Right-handed alpha
Helix 2	2	A	51	62	Right-handed alpha
Helix 3	3	A	89	93	Right-handed 310
Helix 4	4	A	122	133	Right-handed alpha
Helix 5	5	A	141	153	Right-handed alpha
Helix 6	6	A	167	170	Right-handed 310
Helix 7	7	A	171	173	Right-handed 310
Helix 8	8	A	174	185	Right-handed alpha
Helix 9	9	A	247	255	Right-handed alpha
Helix 10	10	A	260	263	Right-handed alpha
Helix 11	11	A	271	278	Right-handed alpha
Helix 12	12	A	294	296	Right-handed 310
Helix 13	13	A	317	322	Right-handed 310
Helix 14	14	A	323	328	Right-handed 310
Helix 15	15	A	367	377	Right-handed alpha
Helix 16	16	A	377	389	Right-handed alpha
Helix 17	17	A	396	401	Right-handed alpha
Helix 18	18	D	24	35	Right-handed alpha
Helix 19	19	D	51	62	Right-handed alpha
Helix 20	20	D	89	93	Right-handed 310
Helix 21	21	D	122	133	Right-handed alpha
Helix 22	22	D	141	153	Right-handed alpha
Helix 23	23	D	167	170	Right-handed 310
Helix 24	24	D	171	173	Right-handed 310
Helix 25	25	D	174	185	Right-handed alpha
Helix 26	26	D	247	256	Right-handed alpha
Helix 27	27	D	260	263	Right-handed alpha
Helix 28	28	D	271	277	Right-handed alpha
Helix 29	29	D	294	296	Right-handed 310
Helix 30	30	D	317	322	Right-handed 310
Helix 31	31	D	323	328	Right-handed 310
Helix 32	32	D	367	376	Right-handed alpha
Helix 33	33	D	377	389	Right-handed alpha
Helix 34	34	D	396	401	Right-handed alpha

There are 12 sheets in PDB entry 2JG3. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, A, DB, C, DD, DE, DF,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	66	71	parallel
Strand 3	A	42	46	parallel
Strand 4	A	99	104	parallel
Strand 5	A	154	165	parallel
Strand 6	A	203	209	anti-parallel
Strand 7	A	186	193	anti-parallel
Strand 8	A	215	223	parallel
Strand 9	A	226	235	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	404	405	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	268	first strand
Strand 2	A	356	360	anti-parallel
Strand 3	A	330	333	anti-parallel
Strand 4	A	343	346	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	291	first strand
Strand 2	A	313	315	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	302	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	410	412	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	87	first strand
Strand 2	D	66	71	parallel
Strand 3	D	42	46	parallel
Strand 4	D	99	104	parallel
Strand 5	D	154	165	parallel
Strand 6	D	203	209	anti-parallel
Strand 7	D	186	193	anti-parallel
Strand 8	D	215	222	parallel
Strand 9	D	227	235	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	404	405	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	268	first strand
Strand 2	D	356	360	anti-parallel
Strand 3	D	330	333	anti-parallel
Strand 4	D	343	346	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	291	first strand
Strand 2	D	313	315	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	299	first strand
Strand 2	D	302	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	366	first strand
Strand 2	D	410	412	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2JG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
2JG3