Analysis of interatomic Contacts of Structural Units in PDB entry:
2JI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JI8 entry

There are 2 chains in PDB entry 2JI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 7VAL 565
B
VAL 7VAL 562
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 2JI8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
55 71Right-handed alpha
Helix 4
4
A
80 98Right-handed alpha
Helix 5
5
A
109 115Right-handed alpha
Helix 6
6
A
124 129Right-handed alpha
Helix 7
7
A
130 133Right-handed 310
Helix 8
8
A
141 143Right-handed 310
Helix 9
9
A
144 158Right-handed alpha
Helix 10
10
A
171 173Right-handed 310
Helix 11
11
A
179 186Right-handed alpha
Helix 12
12
A
199 213Right-handed alpha
Helix 13
13
A
221 227Right-handed alpha
Helix 14
14
A
229 241Right-handed alpha
Helix 15
15
A
248 251Right-handed 310
Helix 16
16
A
262 264Right-handed 310
Helix 17
17
A
265 273Right-handed alpha
Helix 18
18
A
284 291Right-handed 310
Helix 19
19
A
292 296Right-handed 310
Helix 20
20
A
308 312Right-handed 310
Helix 21
21
A
325 338Right-handed alpha
Helix 22
22
A
344 368Right-handed alpha
Helix 23
23
A
376 391Right-handed alpha
Helix 24
24
A
401 411Right-handed alpha
Helix 25
25
A
430 443Right-handed alpha
Helix 26
26
A
452 457Right-handed alpha
Helix 27
27
A
458 460Right-handed 310
Helix 28
28
A
461 468Right-handed alpha
Helix 29
29
A
504 511Right-handed alpha
Helix 30
30
A
521 536Right-handed alpha
Helix 31
31
A
553 557Right-handed 310
Helix 32
32
B
12 23Right-handed alpha
Helix 33
33
B
36 46Right-handed alpha
Helix 34
34
B
55 71Right-handed alpha
Helix 35
35
B
80 98Right-handed alpha
Helix 36
36
B
109 115Right-handed alpha
Helix 37
37
B
124 129Right-handed alpha
Helix 38
38
B
130 133Right-handed 310
Helix 39
39
B
141 143Right-handed 310
Helix 40
40
B
144 158Right-handed alpha
Helix 41
41
B
171 173Right-handed 310
Helix 42
42
B
179 186Right-handed alpha
Helix 43
43
B
199 212Right-handed alpha
Helix 44
44
B
221 227Right-handed alpha
Helix 45
45
B
229 241Right-handed alpha
Helix 46
46
B
262 264Right-handed 310
Helix 47
47
B
265 273Right-handed alpha
Helix 48
48
B
284 291Right-handed 310
Helix 49
49
B
292 296Right-handed 310
Helix 50
50
B
308 312Right-handed 310
Helix 51
51
B
325 338Right-handed alpha
Helix 52
52
B
344 368Right-handed alpha
Helix 53
53
B
376 391Right-handed alpha
Helix 54
54
B
401 411Right-handed alpha
Helix 55
55
B
430 443Right-handed alpha
Helix 56
56
B
452 456Right-handed alpha
Helix 57
57
B
457 460Right-handed 310
Helix 58
58
B
461 468Right-handed alpha
Helix 59
59
B
504 512Right-handed alpha
Helix 60
60
B
521 536Right-handed alpha
Helix 61
61
B
553 560Right-handed 310
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There are 8 sheets in PDB entry 2JI8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 11first strand
Strand 2
A
176 178anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 52first strand
Strand 2
A
27 30parallel
Strand 3
A
74 78parallel
Strand 4
A
101 107parallel
Strand 5
A
163 169parallel
Strand 6
A
135 138parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
244 246first strand
Strand 2
A
217 220parallel
Strand 3
A
275 279parallel
Strand 4
A
301 306parallel
Strand 5
A
320 323parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
419 420first strand
Strand 2
A
395 399parallel
Strand 3
A
446 451parallel
Strand 4
A
472 478parallel
Strand 5
A
539 544parallel
Strand 6
A
515 519parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
9 11first strand
Strand 2
B
176 178anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
49 52first strand
Strand 2
B
27 30parallel
Strand 3
B
74 78parallel
Strand 4
B
101 107parallel
Strand 5
B
163 169parallel
Strand 6
B
135 138parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
244 246first strand
Strand 2
B
217 220parallel
Strand 3
B
275 279parallel
Strand 4
B
301 306parallel
Strand 5
B
320 323parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
419 421first strand
Strand 2
B
395 399parallel
Strand 3
B
446 451parallel
Strand 4
B
472 478parallel
Strand 5
B
539 544parallel
Strand 6
B
515 519parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il