Analysis of interatomic Contacts of Structural Units in PDB entry:
2JIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JIH entry

There are 2 chains in PDB entry 2JIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 256PRO 551
B
SER 256ARG 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2JIH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
267 275Right-handed alpha
Helix 2
2
A
277 293Right-handed alpha
Helix 3
3
A
294 299Right-handed 310
Helix 4
4
A
314 318Right-handed 310
Helix 5
5
A
324 338Right-handed alpha
Helix 6
6
A
394 407Right-handed alpha
Helix 7
7
A
414 418Right-handed 310
Helix 8
8
A
444 457Right-handed alpha
Helix 9
9
A
460 464Right-handed 310
Helix 10
10
A
477 482Right-handed alpha
Helix 11
11
A
483 493Right-handed alpha
Helix 12
12
B
267 275Right-handed alpha
Helix 13
13
B
277 295Right-handed alpha
Helix 14
14
B
296 299Right-handed 310
Helix 15
15
B
314 318Right-handed 310
Helix 16
16
B
324 337Right-handed alpha
Helix 17
17
B
338 340Right-handed 310
Helix 18
18
B
394 407Right-handed alpha
Helix 19
19
B
444 457Right-handed alpha
Helix 20
20
B
460 464Right-handed 310
Helix 21
21
B
477 482Right-handed alpha
Helix 22
22
B
483 493Right-handed alpha
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There are 6 sheets in PDB entry 2JIH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 311first strand
Strand 2
A
257 266parallel
Strand 3
A
352 357parallel
Strand 4
A
385 389parallel
Strand 5
A
371 373anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
510 513first strand
Strand 2
A
520 523anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
538 541first strand
Strand 2
A
544 547anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
302 311first strand
Strand 2
B
258 266parallel
Strand 3
B
352 357parallel
Strand 4
B
385 389parallel
Strand 5
B
371 373anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
510 513first strand
Strand 2
B
520 523anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
533 535first strand
Strand 2
B
538 541anti-parallel
Strand 3
B
544 547anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il