Analysis of interatomic Contacts of Structural Units in PDB entry:
2JIL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JIL entry

There are 2 chains in PDB entry 2JIL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1VAL 243
B
 SER -1VAL 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2JIL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
189 195Right-handed alpha
Helix 2
2
A
215 226Right-handed alpha
Helix 3
3
B
173 177Right-handed 310
Helix 4
4
B
189 195Right-handed alpha
Helix 5
5
B
215 226Right-handed alpha
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There are 4 sheets in PDB entry 2JIL. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 156first strand
Strand 2
A
229 237anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
209 210anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 185first strand
Strand 2
A
164 169anti-parallel
Strand 3
B
240 242anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
0 156first strand
Strand 2
B
229 237anti-parallel
Strand 3
B
202 206anti-parallel
Strand 4
B
209 210anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 169first strand
Strand 2
B
178 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il