Analysis of interatomic Contacts of Structural Units in PDB entry:
2JJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JJY entry

There are 4 chains in PDB entry 2JJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2HIS 268
B
 GLY 2HIS 263
C
 GLY 2HIS 268
D
 GLY 2LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2JJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
43 52Right-handed alpha
Helix 3
3
A
53 55Right-handed 310
Helix 4
4
A
66 81Right-handed alpha
Helix 5
5
A
95 99Right-handed 310
Helix 6
6
A
102 107Right-handed alpha
Helix 7
7
A
108 120Right-handed alpha
Helix 8
8
A
120 131Right-handed alpha
Helix 9
9
A
132 135Right-handed 310
Helix 10
10
A
146 150Right-handed 310
Helix 11
11
A
156 177Right-handed alpha
Helix 12
12
A
206 214Right-handed alpha
Helix 13
13
A
221 232Right-handed alpha
Helix 14
14
A
233 238Right-handed 310
Helix 15
15
A
250 253Right-handed 310
Helix 16
16
B
19 31Right-handed alpha
Helix 17
17
B
40 42Right-handed 310
Helix 18
18
B
43 52Right-handed alpha
Helix 19
19
B
53 55Right-handed 310
Helix 20
20
B
66 81Right-handed alpha
Helix 21
21
B
95 99Right-handed 310
Helix 22
22
B
102 107Right-handed alpha
Helix 23
23
B
108 120Right-handed alpha
Helix 24
24
B
120 131Right-handed alpha
Helix 25
25
B
132 134Right-handed 310
Helix 26
26
B
146 150Right-handed 310
Helix 27
27
B
156 178Right-handed alpha
Helix 28
28
B
179 181Right-handed 310
Helix 29
29
B
221 232Right-handed alpha
Helix 30
30
B
233 238Right-handed 310
Helix 31
31
B
250 253Right-handed 310
Helix 32
32
C
19 31Right-handed alpha
Helix 33
33
C
43 52Right-handed alpha
Helix 34
34
C
53 55Right-handed 310
Helix 35
35
C
66 81Right-handed alpha
Helix 36
36
C
95 99Right-handed 310
Helix 37
37
C
102 107Right-handed alpha
Helix 38
38
C
108 120Right-handed alpha
Helix 39
39
C
120 135Right-handed alpha
Helix 40
40
C
146 150Right-handed 310
Helix 41
41
C
156 178Right-handed alpha
Helix 42
42
C
179 181Right-handed 310
Helix 43
43
C
209 214Right-handed alpha
Helix 44
44
C
221 232Right-handed alpha
Helix 45
45
C
233 238Right-handed 310
Helix 46
46
C
250 253Right-handed 310
Helix 47
47
D
19 31Right-handed alpha
Helix 48
48
D
43 52Right-handed alpha
Helix 49
49
D
53 55Right-handed 310
Helix 50
50
D
66 78Right-handed alpha
Helix 51
51
D
95 99Right-handed 310
Helix 52
52
D
102 107Right-handed alpha
Helix 53
53
D
108 120Right-handed alpha
Helix 54
54
D
120 131Right-handed alpha
Helix 55
55
D
132 134Right-handed 310
Helix 56
56
D
157 177Right-handed alpha
Helix 57
57
D
206 214Right-handed alpha
Helix 58
58
D
221 232Right-handed alpha
Helix 59
59
D
233 238Right-handed 310
Helix 60
60
D
250 253Right-handed 310
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There are 6 sheets in PDB entry 2JJY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, A,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
34 39parallel
Strand 3
A
8 11parallel
Strand 4
A
86 89parallel
Strand 5
A
140 145parallel
Strand 6
A
183 189parallel
Strand 7
A
244 247parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
C
260 261parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
C
264 267parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
34 39parallel
Strand 3
B
8 11parallel
Strand 4
B
86 89parallel
Strand 5
B
140 145parallel
Strand 6
B
183 189parallel
Strand 7
B
244 247parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 61first strand
Strand 2
C
34 39parallel
Strand 3
C
8 11parallel
Strand 4
C
86 89parallel
Strand 5
C
140 145parallel
Strand 6
C
183 189parallel
Strand 7
C
244 247parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 61first strand
Strand 2
D
34 39parallel
Strand 3
D
8 11parallel
Strand 4
D
86 89parallel
Strand 5
D
140 146parallel
Strand 6
D
183 189parallel
Strand 7
D
244 247parallel
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