Analysis of interatomic Contacts of Structural Units in PDB entry:
2JKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JKK entry

There is 1 chain in PDB entry 2JKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 413LYS 684
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2JKK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
418 420Right-handed 310
Helix 2
2
A
461 477Right-handed alpha
Helix 3
3
A
506 514Right-handed alpha
Helix 4
4
A
515 518Right-handed 310
Helix 5
5
A
519 540Right-handed alpha
Helix 6
6
A
548 550Right-handed 310
Helix 7
7
A
564 569Right-handed alpha
Helix 8
8
A
585 589Right-handed 310
Helix 9
9
A
590 597Right-handed alpha
Helix 10
10
A
600 617Right-handed alpha
Helix 11
11
A
627 637Right-handed alpha
Helix 12
12
A
648 659Right-handed alpha
Helix 13
13
A
662 666Right-handed 310
Helix 14
14
A
668 684Right-handed alpha
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There are 2 sheets in PDB entry 2JKK. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
422 431first strand
Strand 2
A
434 443anti-parallel
Strand 3
A
446 455anti-parallel
Strand 4
A
496 500anti-parallel
Strand 5
A
486 490anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
552 556first strand
Strand 2
A
559 562anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il