Analysis of interatomic Contacts of Structural Units in PDB entry:
2KTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2KTY entry

There is 1 chain in PDB entry 2KTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2KTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 90Right-handed alpha
Helix 2
2
A
92 103Right-handed alpha
Helix 3
3
A
138 145Right-handed alpha
Helix 4
4
A
150 170Right-handed alpha
Helix 5
5
A
179 181Right-handed 310
Helix 6
6
A
197 199Right-handed 310
Helix 7
7
A
205 209Right-handed 310
Helix 8
8
A
224 234Right-handed alpha
Helix 9
9
A
240 257Right-handed alpha
Helix 10
10
A
261 265Right-handed 310
Helix 11
11
A
267 281Right-handed alpha
Helix 12
12
A
281 289Right-handed alpha
Helix 13
13
A
297 310Right-handed alpha
Helix 14
14
A
316 330Right-handed alpha
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There are 3 sheets in PDB entry 2KTY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
68 73anti-parallel
Strand 5
A
125 132anti-parallel
Strand 6
A
113 120anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
183 186anti-parallel
Strand 3
A
193 195anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
201 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il