Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2LAY entry
Note, this PDB entry contains
modified residue(s) PHOSPHOSERINE (SEP) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 3 chains in PDB entry 2LAY
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ASP 170 | ALA 205 |
B
|
SER 201 | HIS 205 |
B
|
PRO 207 | SER 209 |
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There are no helices in PDB entry
2LAY
There is
1 sheet ( A) in PDB entry 2LAY.
There are 3
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 177 |
182 | first strand |
Strand 2 |
A
| 186 |
191 | anti-parallel |
Strand 3 |
A
| 196 |
198 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il