Analysis of interatomic Contacts of Structural Units in PDB entry:
2LMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2LMQ entry

There are 18 chains in PDB entry 2LMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 9VAL 40
B
GLY 9VAL 40
C
GLY 9VAL 40
D
GLY 9VAL 40
E
GLY 9VAL 40
F
GLY 9VAL 40
G
GLY 9VAL 40
H
GLY 9VAL 40
I
GLY 9VAL 40
J
GLY 9VAL 40
K
GLY 9VAL 40
L
GLY 9VAL 40
M
GLY 9VAL 40
N
GLY 9VAL 40
O
GLY 9VAL 40
P
GLY 9VAL 40
Q
GLY 9VAL 40
R
GLY 9VAL 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2LMQ


There are 8 sheets in PDB entry 2LMQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
16 21first strand
Strand 2
B
11 21parallel
Strand 3
C
11 21parallel
Strand 4
D
11 12parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
16 21first strand
Strand 2
B
11 21parallel
Strand 3
C
11 21parallel
Strand 4
D
17 22parallel
Strand 5
E
17 22parallel
Strand 6
F
17 21parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 36first strand
Strand 2
B
31 36parallel
Strand 3
C
31 36parallel
Strand 4
D
31 36parallel
Strand 5
E
31 36parallel
Strand 6
F
31 36parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
10 21first strand
Strand 2
H
10 22parallel
Strand 3
I
12 22parallel
Strand 4
J
11 21parallel
Strand 5
K
11 21parallel
Strand 6
L
13 21parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
30 37first strand
Strand 2
H
30 37parallel
Strand 3
I
31 36parallel
Strand 4
J
31 36parallel
Strand 5
K
31 36parallel
Strand 6
L
31 36parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
16 21first strand
Strand 2
N
16 21parallel
Strand 3
O
17 21parallel
Strand 4
P
16 21parallel
Strand 5
Q
16 21parallel
Strand 6
R
17 21parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
30 36first strand
Strand 2
N
30 36parallel
Strand 3
O
30 36parallel
Strand 4
P
30 36parallel
Strand 5
Q
30 35parallel
Strand 6
R
31 35parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
13 14first strand
Strand 2
P
13 14parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il