Analysis of interatomic Contacts of Structural Units in PDB entry:
2M8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2M8L entry

There are 2 chains in PDB entry 2M8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1VAL 221
B
 PRO 1VAL 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 2M8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
35 44Right-handed alpha
Helix 3
3
A
48 59Right-handed alpha
Helix 4
4
A
62 84Right-handed alpha
Helix 5
5
A
100 105Right-handed alpha
Helix 6
6
A
110 119Right-handed alpha
Helix 7
7
A
125 145Right-handed alpha
Helix 8
8
A
149 153Right-handed 310
Helix 9
9
A
160 175Right-handed alpha
Helix 10
10
A
178 188Right-handed alpha
Helix 11
11
A
188 193Right-handed alpha
Helix 12
12
A
195 203Right-handed alpha
Helix 13
13
A
210 219Right-handed alpha
Helix 14
14
B
16 30Right-handed alpha
Helix 15
15
B
35 44Right-handed alpha
Helix 16
16
B
48 59Right-handed alpha
Helix 17
17
B
62 84Right-handed alpha
Helix 18
18
B
100 105Right-handed alpha
Helix 19
19
B
110 119Right-handed alpha
Helix 20
20
B
125 145Right-handed alpha
Helix 21
21
B
160 175Right-handed alpha
Helix 22
22
B
178 188Right-handed alpha
Helix 23
23
B
188 193Right-handed alpha
Helix 24
24
B
195 203Right-handed alpha
Helix 25
25
B
210 219Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2M8L. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
10 12anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
10 12anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il