Analysis of interatomic Contacts of Structural Units in PDB entry:
2MJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2MJN entry

There is 1 chain in PDB entry 2MJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 89LYS 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2MJN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
107 116Right-handed alpha
Helix 2
2
A
145 156Right-handed alpha
Helix 3
3
A
190 196Right-handed alpha
Helix 4
4
A
215 224Right-handed alpha
Helix 5
5
A
247 259Right-handed alpha
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There are 4 sheets in PDB entry 2MJN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 128first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
95 100anti-parallel
Strand 4
A
167 170anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
160 161first strand
Strand 2
A
164 165anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
229 235first strand
Strand 2
A
240 245anti-parallel
Strand 3
A
204 208anti-parallel
Strand 4
A
269 272anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
262 263first strand
Strand 2
A
266 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il