Analysis of interatomic Contacts of Structural Units in PDB entry:
2NVZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2NVZ entry

There are 13 chains in PDB entry 2NVZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	A 1	A 10
T	C 1	T 28
N	C 1	G 14
A	VAL 2	ILE 1445
B	ASP 20	ASP 1223
C	GLU 3	ASP 268
E	GLN 3	MET 215
F	LYS 72	ASP 154
H	SER 2	ARG 146
I	THR 2	GLN 120
J	MET 1	PRO 65
K	MET 1	LEU 114
L	ALA 25	ARG 70

There are115 helices in PDB entry 2NVZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	31	Right-handed alpha
Helix 2	2	A	92	94	Right-handed 310
Helix 3	3	A	95	104	Right-handed alpha
Helix 4	4	A	134	139	Right-handed alpha
Helix 5	5	A	140	142	Right-handed 310
Helix 6	6	A	203	213	Right-handed alpha
Helix 7	7	A	216	222	Right-handed alpha
Helix 8	8	A	243	247	Right-handed 310
Helix 9	9	A	262	275	Right-handed alpha
Helix 10	10	A	292	303	Right-handed alpha
Helix 11	11	A	325	330	Right-handed alpha
Helix 12	12	A	334	340	Right-handed alpha
Helix 13	13	A	367	372	Right-handed alpha
Helix 14	14	A	384	395	Right-handed alpha
Helix 15	15	A	494	503	Right-handed alpha
Helix 16	16	A	506	511	Right-handed 310
Helix 17	17	A	525	536	Right-handed alpha
Helix 18	18	A	543	551	Right-handed alpha
Helix 19	19	A	574	579	Right-handed alpha
Helix 20	20	A	628	636	Right-handed alpha
Helix 21	21	A	638	661	Right-handed alpha
Helix 22	22	A	665	669	Right-handed 310
Helix 23	23	A	672	675	Right-handed 310
Helix 24	24	A	676	689	Right-handed alpha
Helix 25	25	A	689	698	Right-handed alpha
Helix 26	26	A	716	733	Right-handed alpha
Helix 27	27	A	741	749	Right-handed alpha
Helix 28	28	A	754	763	Right-handed alpha
Helix 29	29	A	793	798	Right-handed alpha
Helix 30	30	A	809	827	Right-handed alpha
Helix 31	31	A	829	846	Right-handed alpha
Helix 32	32	A	867	871	Right-handed 310
Helix 33	33	A	874	876	Right-handed 310
Helix 34	34	A	889	898	Right-handed alpha
Helix 35	35	A	915	920	Right-handed alpha
Helix 36	36	A	928	947	Right-handed alpha
Helix 37	37	A	959	971	Right-handed alpha
Helix 38	38	A	982	994	Right-handed alpha
Helix 39	39	A	1004	1026	Right-handed alpha
Helix 40	40	A	1027	1032	Right-handed alpha
Helix 41	41	A	1038	1054	Right-handed alpha
Helix 42	42	A	1063	1069	Right-handed alpha
Helix 43	43	A	1072	1080	Right-handed alpha
Helix 44	44	A	1097	1107	Right-handed alpha
Helix 45	45	A	1130	1136	Right-handed alpha
Helix 46	46	A	1143	1147	Right-handed 310
Helix 47	47	A	1198	1203	Right-handed alpha
Helix 48	48	A	1208	1216	Right-handed alpha
Helix 49	49	A	1217	1220	Right-handed 310
Helix 50	50	A	1256	1269	Right-handed alpha
Helix 51	51	A	1312	1317	Right-handed alpha
Helix 52	52	A	1331	1340	Right-handed alpha
Helix 53	53	A	1340	1357	Right-handed alpha
Helix 54	54	A	1365	1377	Right-handed alpha
Helix 55	55	A	1395	1401	Right-handed alpha
Helix 56	56	A	1405	1415	Right-handed alpha
Helix 57	57	A	1423	1430	Right-handed alpha
Helix 58	58	B	29	40	Right-handed alpha
Helix 59	59	B	46	56	Right-handed alpha
Helix 60	60	B	57	65	Right-handed alpha
Helix 61	61	B	113	121	Right-handed alpha
Helix 62	62	B	179	183	Right-handed 310
Helix 63	63	B	185	192	Right-handed alpha
Helix 64	64	B	281	288	Right-handed alpha
Helix 65	65	B	307	314	Right-handed alpha
Helix 66	66	B	314	322	Right-handed alpha
Helix 67	67	B	352	357	Right-handed alpha
Helix 68	68	B	371	391	Right-handed alpha
Helix 69	69	B	400	402	Right-handed 310
Helix 70	70	B	408	436	Right-handed alpha
Helix 71	71	B	450	464	Right-handed alpha
Helix 72	72	B	487	496	Right-handed alpha
Helix 73	73	B	515	519	Right-handed 310
Helix 74	74	B	551	559	Right-handed alpha
Helix 75	75	B	593	605	Right-handed alpha
Helix 76	76	B	654	667	Right-handed alpha
Helix 77	77	B	680	687	Right-handed alpha
Helix 78	78	B	694	699	Right-handed alpha
Helix 79	79	B	744	749	Right-handed 310
Helix 80	80	B	750	755	Right-handed alpha
Helix 81	81	B	758	762	Right-handed 310
Helix 82	82	B	763	775	Right-handed alpha
Helix 83	83	B	782	788	Right-handed 310
Helix 84	84	B	806	811	Right-handed 310
Helix 85	85	B	842	849	Right-handed alpha
Helix 86	86	B	1022	1039	Right-handed alpha
Helix 87	87	B	1051	1060	Right-handed alpha
Helix 88	88	B	1098	1103	Right-handed alpha
Helix 89	89	B	1121	1125	Right-handed 310
Helix 90	90	B	1131	1141	Right-handed alpha
Helix 91	91	B	1145	1150	Right-handed alpha
Helix 92	92	B	1197	1211	Right-handed alpha
Helix 93	93	C	26	38	Right-handed alpha
Helix 94	94	C	59	70	Right-handed alpha
Helix 95	95	C	74	80	Right-handed 310
Helix 96	96	C	167	171	Right-handed 310
Helix 97	97	C	239	263	Right-handed alpha
Helix 98	98	C	264	268	Right-handed 310
Helix 99	99	E	6	11	Right-handed alpha
Helix 100	100	E	13	26	Right-handed alpha
Helix 101	101	E	38	44	Right-handed alpha
Helix 102	102	E	55	59	Right-handed 310
Helix 103	103	E	67	71	Right-handed 310
Helix 104	104	E	96	103	Right-handed alpha
Helix 105	105	E	157	168	Right-handed alpha
Helix 106	106	E	182	188	Right-handed alpha
Helix 107	107	F	86	103	Right-handed alpha
Helix 108	108	F	118	127	Right-handed alpha
Helix 109	109	I	60	64	Right-handed 310
Helix 110	110	J	16	27	Right-handed alpha
Helix 111	111	J	31	39	Right-handed alpha
Helix 112	112	J	43	52	Right-handed alpha
Helix 113	113	J	56	62	Right-handed alpha
Helix 114	114	K	41	46	Right-handed alpha
Helix 115	115	K	82	110	Right-handed alpha

There are 42 sheets in PDB entry 2NVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	18	anti-parallel
Strand 3	B	1215	1217	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	90	first strand
Strand 2	A	236	241	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	176	first strand
Strand 2	A	181	184	anti-parallel
Strand 3	A	201	202	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	B	1128	1130	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	455	460	parallel
Strand 3	A	441	445	anti-parallel
Strand 4	A	486	490	anti-parallel
Strand 5	A	348	355	anti-parallel
Strand 6	A	468	470	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	455	460	parallel
Strand 3	A	441	445	anti-parallel
Strand 4	A	486	490	anti-parallel
Strand 5	A	348	355	anti-parallel
Strand 6	B	1104	1106	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	412	413	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	571	573	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	608	first strand
Strand 2	A	611	615	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	769	770	first strand
Strand 2	A	773	774	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel
Strand 3	A	863	865	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	882	first strand
Strand 2	A	953	957	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1282	1292	first strand
Strand 2	A	1298	1309	anti-parallel
Strand 3	A	1115	1119	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1227	1228	first strand
Strand 2	A	1238	1239	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1442	1444	first strand
Strand 2	F	133	138	anti-parallel
Strand 3	F	141	144	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	125	130	anti-parallel
Strand 3	B	165	171	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	212	anti-parallel
Strand 3	B	480	481	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	497	499	parallel
Strand 4	B	537	538	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	226	first strand
Strand 2	B	234	242	anti-parallel
Strand 3	B	252	259	anti-parallel
Strand 4	B	269	272	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	634	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	590	first strand
Strand 2	B	578	582	anti-parallel
Strand 3	B	623	627	parallel
Strand 4	B	614	618	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	641	first strand
Strand 2	B	650	651	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	704	first strand
Strand 2	B	740	741	parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	794	796	first strand
Strand 2	B	853	861	anti-parallel
Strand 3	B	962	972	anti-parallel
Strand 4	B	946	956	anti-parallel
Strand 5	B	904	906	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	1042	1043	parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	821	first strand
Strand 2	B	1092	1094	anti-parallel
Strand 3	B	980	982	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	989	993	first strand
Strand 2	B	838	841	parallel
Strand 3	B	1010	1012	anti-parallel
Strand 4	B	824	827	parallel
Strand 5	B	1085	1089	anti-parallel
Strand 6	B	1069	1070	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	873	874	first strand
Strand 2	B	914	915	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1001	1002	first strand
Strand 2	B	1072	1073	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1163	first strand
Strand 2	B	1191	1195	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	17	20	anti-parallel
Strand 3	C	230	233	anti-parallel
Strand 4	C	176	177	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	152	154	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	118	120	anti-parallel

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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	152	154	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	157	163	anti-parallel
Strand 5	C	42	51	anti-parallel
Strand 6	L	65	68	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	143	147	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	78	80	anti-parallel
Strand 3	E	107	109	parallel
Strand 4	E	131	133	parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	155	first strand
Strand 2	E	196	200	anti-parallel
Strand 3	E	208	214	anti-parallel
Strand 4	E	177	178	parallel

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There are 9 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	96	first strand
Strand 2	H	143	144	anti-parallel
Strand 3	H	54	58	anti-parallel
Strand 4	H	9	15	anti-parallel
Strand 5	H	26	30	anti-parallel
Strand 6	H	37	40	anti-parallel
Strand 7	H	121	126	anti-parallel
Strand 8	H	113	118	anti-parallel
Strand 9	H	100	101	anti-parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	16	first strand
Strand 2	I	26	28	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	87	first strand
Strand 2	I	99	103	anti-parallel
Strand 3	I	109	110	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	30	35	anti-parallel
Strand 3	K	71	77	anti-parallel
Strand 4	K	56	63	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	30	first strand
Strand 2	L	37	38	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2NVZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
2NVZ