Analysis of interatomic Contacts of Structural Units in PDB entry:
2NZ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2NZ9 entry

There are 6 chains in PDB entry 2NZ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PRO 1295
B	PRO 2	PRO 1295
C	GLU 1	GLY 216
D	VAL 2	PRO 218
E	GLU 1	GLY 216
F	VAL 2	PRO 218

There are 83 helices in PDB entry 2NZ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	80	101	Right-handed alpha
Helix 2	2	A	101	114	Right-handed alpha
Helix 3	3	A	130	132	Right-handed 310
Helix 4	4	A	200	204	Right-handed 310
Helix 5	5	A	216	234	Right-handed alpha
Helix 6	6	A	259	267	Right-handed alpha
Helix 7	7	A	270	274	Right-handed 310
Helix 8	8	A	275	300	Right-handed alpha
Helix 9	9	A	309	321	Right-handed alpha
Helix 10	10	A	334	347	Right-handed alpha
Helix 11	11	A	350	359	Right-handed alpha
Helix 12	12	A	395	399	Right-handed 310
Helix 13	13	A	401	405	Right-handed 310
Helix 14	14	A	460	462	Right-handed 310
Helix 15	15	A	467	471	Right-handed 310
Helix 16	16	A	495	506	Right-handed alpha
Helix 17	17	A	549	557	Right-handed alpha
Helix 18	18	A	587	595	Right-handed alpha
Helix 19	19	A	602	619	Right-handed alpha
Helix 20	20	A	636	642	Right-handed alpha
Helix 21	21	A	651	660	Right-handed alpha
Helix 22	22	A	661	664	Right-handed 310
Helix 23	23	A	688	721	Right-handed alpha
Helix 24	24	A	721	752	Right-handed alpha
Helix 25	25	A	765	800	Right-handed alpha
Helix 26	26	A	800	826	Right-handed alpha
Helix 27	27	A	826	831	Right-handed alpha
Helix 28	28	A	833	845	Right-handed alpha
Helix 29	29	A	852	856	Right-handed 310
Helix 30	30	A	859	871	Right-handed alpha
Helix 31	31	A	930	933	Right-handed 310
Helix 32	32	A	934	939	Right-handed 310
Helix 33	33	A	954	958	Right-handed 310
Helix 34	34	A	1080	1091	Right-handed alpha
Helix 35	35	A	1265	1274	Right-handed alpha
Helix 36	36	B	80	100	Right-handed alpha
Helix 37	37	B	101	114	Right-handed alpha
Helix 38	38	B	130	132	Right-handed 310
Helix 39	39	B	200	204	Right-handed 310
Helix 40	40	B	216	233	Right-handed alpha
Helix 41	41	B	259	267	Right-handed alpha
Helix 42	42	B	269	274	Right-handed 310
Helix 43	43	B	275	300	Right-handed alpha
Helix 44	44	B	309	322	Right-handed alpha
Helix 45	45	B	334	348	Right-handed alpha
Helix 46	46	B	350	358	Right-handed alpha
Helix 47	47	B	395	399	Right-handed 310
Helix 48	48	B	401	405	Right-handed 310
Helix 49	49	B	460	462	Right-handed 310
Helix 50	50	B	467	471	Right-handed 310
Helix 51	51	B	495	504	Right-handed alpha
Helix 52	52	B	549	556	Right-handed alpha
Helix 53	53	B	587	592	Right-handed alpha
Helix 54	54	B	602	620	Right-handed alpha
Helix 55	55	B	636	642	Right-handed alpha
Helix 56	56	B	651	660	Right-handed alpha
Helix 57	57	B	661	664	Right-handed 310
Helix 58	58	B	687	721	Right-handed alpha
Helix 59	59	B	721	754	Right-handed alpha
Helix 60	60	B	765	800	Right-handed alpha
Helix 61	61	B	800	826	Right-handed alpha
Helix 62	62	B	834	846	Right-handed alpha
Helix 63	63	B	852	856	Right-handed 310
Helix 64	64	B	859	872	Right-handed alpha
Helix 65	65	B	873	877	Right-handed 310
Helix 66	66	B	930	933	Right-handed 310
Helix 67	67	B	934	939	Right-handed 310
Helix 68	68	B	954	960	Right-handed 310
Helix 69	69	B	1080	1091	Right-handed alpha
Helix 70	70	B	1266	1274	Right-handed 310
Helix 71	71	C	125	130	Right-handed alpha
Helix 72	72	C	187	191	Right-handed alpha
Helix 73	73	D	28	32	Right-handed 310
Helix 74	74	D	62	65	Right-handed 310
Helix 75	75	D	74	76	Right-handed 310
Helix 76	76	D	87	91	Right-handed 310
Helix 77	77	E	83	87	Right-handed 310
Helix 78	78	E	125	132	Right-handed alpha
Helix 79	79	E	187	191	Right-handed alpha
Helix 80	80	F	28	32	Right-handed 310
Helix 81	81	F	87	91	Right-handed 310
Helix 82	82	F	161	163	Right-handed 310
Helix 83	83	F	206	209	Right-handed 310

There are 51 sheets in PDB entry 2NZ9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	A	19	23	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	42	48	anti-parallel
Strand 6	A	151	155	parallel
Strand 7	A	184	187	parallel
Strand 8	A	165	166	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	302	303	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	372	375	anti-parallel
Strand 4	A	414	415	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	331	332	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	458	first strand
Strand 2	A	426	430	anti-parallel
Strand 3	A	542	543	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	679	681	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	877	884	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	914	917	anti-parallel
Strand 5	A	905	906	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	877	884	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	942	948	anti-parallel
Strand 5	A	1014	1020	anti-parallel
Strand 6	A	1026	1031	anti-parallel
Strand 7	A	1034	1040	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	900	first strand
Strand 2	A	923	928	anti-parallel
Strand 3	A	1052	1058	anti-parallel
Strand 4	A	962	969	anti-parallel
Strand 5	A	972	979	anti-parallel
Strand 6	A	982	988	anti-parallel
Strand 7	A	994	1000	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1203	1205	first strand
Strand 2	A	1261	1264	anti-parallel
Strand 3	A	1246	1252	anti-parallel
Strand 4	A	1237	1240	anti-parallel
Strand 5	A	1220	1223	anti-parallel
Strand 6	A	1179	1186	anti-parallel
Strand 7	A	1189	1194	anti-parallel
Strand 8	A	1207	1209	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1203	1205	first strand
Strand 2	A	1261	1264	anti-parallel
Strand 3	A	1246	1252	anti-parallel
Strand 4	A	1237	1240	anti-parallel
Strand 5	A	1220	1223	anti-parallel
Strand 6	A	1179	1186	anti-parallel
Strand 7	A	1159	1164	anti-parallel
Strand 8	A	1111	1115	anti-parallel
Strand 9	A	1282	1285	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1122	1125	first strand
Strand 2	A	1134	1137	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1142	1145	first strand
Strand 2	A	1149	1152	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	134	138	anti-parallel
Strand 3	B	19	23	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	42	48	anti-parallel
Strand 6	B	151	155	parallel
Strand 7	B	184	187	parallel
Strand 8	B	164	166	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	524	525	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	302	303	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	192	196	anti-parallel
Strand 3	B	372	375	anti-parallel
Strand 4	B	414	415	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	331	332	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	458	first strand
Strand 2	B	426	431	anti-parallel
Strand 3	B	542	545	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	481	first strand
Strand 2	B	679	681	parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	879	884	anti-parallel
Strand 3	B	1066	1075	anti-parallel
Strand 4	B	914	917	anti-parallel
Strand 5	B	905	906	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	879	884	anti-parallel
Strand 3	B	1066	1075	anti-parallel
Strand 4	B	942	948	anti-parallel
Strand 5	B	1015	1020	anti-parallel
Strand 6	B	1026	1031	anti-parallel
Strand 7	B	1034	1040	anti-parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	900	first strand
Strand 2	B	923	928	anti-parallel
Strand 3	B	1052	1058	anti-parallel
Strand 4	B	962	969	anti-parallel
Strand 5	B	972	979	anti-parallel
Strand 6	B	982	988	anti-parallel
Strand 7	B	995	1000	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1207	1209	first strand
Strand 2	B	1190	1194	anti-parallel
Strand 3	B	1178	1185	anti-parallel
Strand 4	B	1221	1223	anti-parallel
Strand 5	B	1237	1240	anti-parallel
Strand 6	B	1246	1249	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1207	1209	first strand
Strand 2	B	1190	1194	anti-parallel
Strand 3	B	1178	1185	anti-parallel
Strand 4	B	1159	1164	anti-parallel
Strand 5	B	1111	1115	anti-parallel
Strand 6	B	1282	1285	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1122	1127	first strand
Strand 2	B	1133	1137	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1142	1145	first strand
Strand 2	B	1149	1152	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1204	1205	first strand
Strand 2	B	1261	1263	anti-parallel
Strand 3	B	1251	1252	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	21	25	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	66	67	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	106	109	parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	37	42	anti-parallel
Strand 5	C	49	53	anti-parallel
Strand 6	C	57	58	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	106	109	parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	101	102	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	34	35	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	133	143	anti-parallel
Strand 3	C	177	186	anti-parallel
Strand 4	C	163	167	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	196	201	anti-parallel
Strand 4	C	209	213	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	112	116	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	112	116	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	105	108	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	129	first strand
Strand 2	D	141	150	anti-parallel
Strand 3	D	181	189	anti-parallel
Strand 4	D	168	170	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	129	first strand
Strand 2	D	141	150	anti-parallel
Strand 3	D	181	189	anti-parallel
Strand 4	D	174	175	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	159	first strand
Strand 2	D	200	205	anti-parallel
Strand 3	D	210	215	anti-parallel

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There are 6 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	106	110	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	37	42	anti-parallel
Strand 5	E	49	53	anti-parallel
Strand 6	E	57	58	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	106	110	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	101	102	anti-parallel

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There are 3 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	23	first strand
Strand 2	E	75	79	anti-parallel
Strand 3	E	66	70	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	34	35	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	122	first strand
Strand 2	E	133	143	anti-parallel
Strand 3	E	177	186	anti-parallel
Strand 4	E	165	167	anti-parallel

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There are 3 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	154	first strand
Strand 2	E	195	201	anti-parallel
Strand 3	E	209	214	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	113	116	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	113	116	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	104	108	anti-parallel

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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	141	150	anti-parallel
Strand 3	F	181	189	anti-parallel
Strand 4	F	168	170	anti-parallel

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There are 3 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	159	first strand
Strand 2	F	200	205	anti-parallel
Strand 3	F	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2NZ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
2NZ9