Analysis of interatomic Contacts of Structural Units in PDB entry:
2O07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O07 entry

There are 2 chains in PDB entry 2O07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 16ASP 300
B
 ALA 15ASN 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2O07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 89Right-handed alpha
Helix 2
2
A
105 112Right-handed alpha
Helix 3
3
A
126 137Right-handed alpha
Helix 4
4
A
137 142Right-handed alpha
Helix 5
5
A
143 146Right-handed 310
Helix 6
6
A
155 162Right-handed alpha
Helix 7
7
A
187 196Right-handed alpha
Helix 8
8
A
213 228Right-handed alpha
Helix 9
9
A
241 243Right-handed 310
Helix 10
10
A
267 274Right-handed alpha
Helix 11
11
A
280 287Right-handed alpha
Helix 12
12
A
291 300Right-handed alpha
Helix 13
13
B
75 89Right-handed alpha
Helix 14
14
B
105 112Right-handed alpha
Helix 15
15
B
126 137Right-handed alpha
Helix 16
16
B
137 142Right-handed alpha
Helix 17
17
B
143 146Right-handed 310
Helix 18
18
B
155 161Right-handed alpha
Helix 19
19
B
178 185Right-handed 310
Helix 20
20
B
186 196Right-handed alpha
Helix 21
21
B
213 226Right-handed alpha
Helix 22
22
B
241 243Right-handed 310
Helix 23
23
B
267 274Right-handed alpha
Helix 24
24
B
280 287Right-handed alpha
Helix 25
25
B
291 299Right-handed alpha
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There are 4 sheets in PDB entry 2O07. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
20 23anti-parallel
Strand 3
A
31 47anti-parallel
Strand 4
B
31 47anti-parallel
Strand 5
B
20 23anti-parallel
Strand 6
B
16 17anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
61 65anti-parallel
Strand 3
A
50 56anti-parallel
Strand 4
A
31 47anti-parallel
Strand 5
B
31 47anti-parallel
Strand 6
B
50 56anti-parallel
Strand 7
B
61 65anti-parallel
Strand 8
B
68 72anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
119 124parallel
Strand 3
A
96 103parallel
Strand 4
A
167 173parallel
Strand 5
A
197 208parallel
Strand 6
A
245 252anti-parallel
Strand 7
A
230 237anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
119 124parallel
Strand 3
B
96 103parallel
Strand 4
B
167 173parallel
Strand 5
B
197 208parallel
Strand 6
B
245 252anti-parallel
Strand 7
B
230 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il