Analysis of interatomic Contacts of Structural Units in PDB entry:
2O0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O0J entry

There is 1 chain in PDB entry 2O0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2O0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 28Right-handed 310
Helix 2
2
A
51 58Right-handed alpha
Helix 3
3
A
103 116Right-handed alpha
Helix 4
4
A
116 125Right-handed alpha
Helix 5
5
A
140 153Right-handed alpha
Helix 6
6
A
165 180Right-handed alpha
Helix 7
7
A
192 210Right-handed alpha
Helix 8
8
A
240 246Right-handed alpha
Helix 9
9
A
257 260Right-handed 310
Helix 10
10
A
262 276Right-handed alpha
Helix 11
11
A
292 303Right-handed alpha
Helix 12
12
A
314 323Right-handed 310
Helix 13
13
A
332 342Right-handed alpha
Helix 14
14
A
344 353Right-handed alpha
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There are 4 sheets in PDB entry 2O0J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
47 49anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
90 94anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
134 136anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
225 228anti-parallel
Strand 3
A
233 238anti-parallel
Strand 4
A
185 190parallel
Strand 5
A
251 255parallel
Strand 6
A
281 286parallel
Strand 7
A
155 160parallel
Strand 8
A
309 313parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il